Table 1.
Properties of VirB5 proteins as deduced from SWISS-MODEL homology modelling, using Escherichia coli Trac1 as template
| Strain | QMEAN4 score | Z-score | Length (aa) (position in the protein (aa)) | Length (aa) of the loop between helixes 2 and 3 | Indel(s) position(s) in the protein (aa) | Protein length (aa) | ||
|---|---|---|---|---|---|---|---|---|
| Helix 1 | Helix 2 | Helix 3 | ||||||
| Bartonella elizabethae (AF195504) | 0.7 | −1.4 | 11 (29–39) | 25 (45–69) | 31 (101–131) | 30 | 72–89 | 177 |
| 92–93 | ||||||||
| 97–103 | ||||||||
| 151–153 | ||||||||
| 157–160 | ||||||||
| 171–172 | ||||||||
| Bartonella grahamii (NC012846) | 0.4 | −4.1 | 11 (29–39) | 25 (45–69) | 31 (98–128) | 28 | 72–85 | 173 |
| 88–89 | ||||||||
| 93–99 | ||||||||
| 147–149 | ||||||||
| 153–156 | ||||||||
| 167–168 | ||||||||
| Bartonella doshiae (Ma16) | 0.5 | −2.6 | 11 (29–39) | 25 (45–69) | 35 (81–115) | 11 | 72–75 | 159 |
| 81–87 | ||||||||
| 149–155 | ||||||||
| Bartonella birtlesii (Af5) | 0.6 | −2.0 | 11 (29–39) | 25 (45–69) | 31 (81–111) | 11 | 72–78 | 148 |
| Bartonella taylorii (Af1) | 0.7 | −1.4 | 11 (29–39) | 25 (45–69) | 29 (80–108) | 10 | 72–75 | 145 |
| B. taylorii (Ma12) | 0.6 | −1.8 | 11 (29–39) | 25 (45–69) | 31 (81–111) | 11 | 72–78a | 148 |
| B. taylorii (Mo2) | 0.6 | −1.8 | 11 (29–39) | 25 (45–69) | 32 (80–111) | 10 | 72–78a | 154 |
| 140–145 | ||||||||
| B. taylorii (Af6) | 0.6 | −1.5 | 11 (29–39) | 25 (45–69) | 31 (81–111) | 11 | 72–78a | 148 |
| B. taylorii (Ma13) | 0.5 | −2.5 | 11 (29–39) | 25 (45–69) | 36 (80–115) | 10 | 72–78 | 152 |
| 84–87 | ||||||||
Indel positions marked following the alignment obtained using prank algorithm
aIdentical amino acid indels