Table 3.

Homopolymer occurrence in pyrosequencing and clone libraries

VIV2	Pyrosequencing						Clone library
	4mers	5mers	6mers	7mers	8mers	>8mers	4mers	5mers	6mers	7mers	8mers	>8mers
A	2,364	796	148	4	1	0	93	35	0	0	0	0
T	1,160	1,051	210	26	0	0	58	71	15	0	0	0
G	9,178	10,843	629	77	17	0	537	849	18	6	0	0
C	2,709	325	85	24	0	0	137	13	3	0	0	0
V3
A	6,820	552	20	2	0	0	570	4	1	0	0	0
T	1,546	487	295	182	1	0	110	24	14	10	0	0
G	1,473	787	621	93	2	0	102	54	28	1	0	0
C	8,438	3,596	403	28	0	0	620	256	33	0	0	0
V4
A	3,064	188	32	1	0	0	137	2	0	0	0	0
T	470	20	0	0	0	0	46	2	0	0	0	0
G	6,393	3,349	450	37	23	5a	652	387	31	0	4	0
C	813	609	45	0	0	0	66	80	0	0	0	0
V6
A	579	58	8	0	0	0	43	3	1	0	0	0
T	1,678	272	2	0	0	0	137	9	0	0	0	0
G	2,599	831	8	1	0	0	278	4	0	0	0	0
C	8,849	6,551	433	16	5	1b	703	392	4	0	0	0

^aFour 9mers and one 10mer

^bOne 9mer