Table 3.
List of the Entrez Gene genes ID (GI), chromosome location, presence of introns, gene type and recommended gene name of all ALDH genes in this study that show evidence of gene duplication, compared with that in the human genome
| Gene (by homology) | Species | NCBI Gene ID | NCBI Gene name | Chromosome | Chromosomal location | Introns | Gene type | Recommended gene name | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Ref Seq ID | Range | |||||||||
| ALDH1A3 | Cow | 507093 | ALDH1A3 | 21 | NC_007319.4 | 4,261,104 | 4,301,275 | yes | Parent gene | ALDH1A3 |
| 534200 | LOC534200 | 28 | NC_007329.4 | 11,750,749 | 11,762,637 | yes | Pseudogene-- detritus | ALDH1A3P1 | ||
| ALDH2 | Zebrafish* | 393462 | aldh2a | 5 | NC_007116.4 | 71,734,127 | 71,754,941 | yes | Parent gene | aldh2.1* |
| 368239 | aldh2b | 5 | NC_007116.4 | 71,708,861 | 71,732,452 | yes | New gene | aldh2.2* | ||
| 100332355 | LOC100332355 | 5 | NC_007116.4 | 71,632,543 | 71,658,511 | yes | New gene | aldh2.3* | ||
| ALDH3A2 | Zebrafish* | 323653 | adh3a2 | 15 | NC_007126.4 | 21,001,391 | 21,009,951 | yes | Parent gene | aldh3a2.1* |
| 100000026 | LOC100000026 | 15 | NC_007126.4 | 20,970,670 | 20,976,922 | yes | New gene | aldh3a2.2* | ||
| 100329417 | LOC100329417 | 21 | NC_007132.4 | 40,585,351 | 40,617,892 | yes | New gene | aldh3a2.3* | ||
| 447920 | zgc:103715 | 21 | NC_007132.4 | 40,905,693 | 40,917,184 | yes | Pseudogene-- detritus | aldh3a2p1 | ||
| Zebra finch | 100230924 | LOC100230924 | 19 | NC_011483.1 | 8,354,898 | 8,361,968 | yes | Parent gene | ALDH3A2 | |
| 100226132 | LOC100226132 | 19 | NC_011483.1 | 8,364,080 | 8,368,708 | yes | New gene | ALDH3A3 | ||
| ALDH3B1 | Cow | 511469 | ALDH3B1 | 29 | NC_007330.4 | 47,708,146 | 47,722,523 | yes | Parent gene | ALDH3B1 |
| 508879 | LOC508879 | 29 | NC_007330.4 | 47,568,715 | 47,575,449 | yes | New gene | ALDH3B4 | ||
| Zebra finch | 100232483 | LOC100232483 | 5 | NC_011469.1 | 7,960,933 | 7,967,624 | yes | Parent gene | ALDH3B1 | |
| 100229547 | LOC100229547 | 5 | NC_011469.1 | 7,968,165 | 7,973,465 | yes | New gene | ALDH3B5 | ||
| ALDH3B2 | Rat | 688800 | ALDH3B2 | 1 | NC_005100.2 | 206,549,529 | 206,553,424 | yes | Parent gene | ALDH3B2 |
| 688778 | LOC688778 | 1 | NC_005100.2 | 206,500,430 | 206,510,746 | yes | New gene | ALDH3B3 | ||
| Mouse | 621603 | Aldh3b2 | 19 | NC_000085.5 | 3,972,328 | 3,981,665 | yes | Parent gene | Aldh3b2 | |
| 73458 | 1700055N04Rik | 19 | NC_000085.5 | 3,958,808 | 3,969,947 | yes | New gene | Aldh3b3 | ||
| ALDH5A1 | Zebrafish* | 565235 | aldh5a1 | 16 | NC_007127.4 | 35,584,243 | 35,592,745 | yes | Parent gene | aldh5a1.1* |
| 100330723 | LOC100330723 | 16 | NC_007127.4 | 35,723,717 | 35,735,263 | yes | New gene | aldh5a1.2* | ||
| ALDH7A1 | Macaque | 702749 | ALDH7A1 | 6 | NC_007863.1 | 122,937,640 | 122,989,782 | yes | Parent gene | ALDH7A1 |
| 716090 | LOC716090 | 14 | NC_007871.1 | 68,342,919 | 68,344,780 | no | Pseudogene-- RTevent | ALDH7A1P5 | ||
| ALDH9A1 | Zebrafish* | 100005587 | aldh9a1a | 8 | NC_007119.4 | 21,476,877 | 21,484,987 | yes | Parent gene | aldh9a1.1* |
| 399481 | aldh9a1b | 2 | NC_007113.4 | 4,838,438 | 4,863,128 | yes | New gene | aldh9a1.2* | ||
| 100006238 | LOC100006238 | 8 | NC_007119.4 | 21,464,110 | 21,473,710 | yes | New gene | aldh9a1.3* | ||
| ALDH18A1 | Zebrafish* | 557186 | aldh18a1 | 12 | NC_007123.4 | 29,670,615 | 29,686,508 | yes | Parent gene | aldh18a1.1* |
| 100332705 | LOC100332705 | 12 | NC_007123.4 | 29,643,982 | 29,661,436 | yes | New gene | aldh18a1.2* | ||
*Zebrafish genes are named in accordance with nomenclature guidelines described at (http://www.zfin.org) and established by Mullins et al. [15].
RT, reverse transcription