Table 4.

Summary of results from logistic regression on the top 20 predictors identified by BOSS in the T2D dataset

SNP	Chr	Position (bp)	Gene	OR (95% CI)	p Value
rs7193144	16	53810686	FTO	1.25 (1.13 to 1.39)	2.4×10−5
rs7115136	11	98935203		0.79 (0.71 to 0.89)	4.1×10−5
rs540532	2	30954621		1.38 (1.20 to 1.59)	8.3×10−6
rs1426409	4	37173944		0.78 (0.69 to 0.88)	3.6×10−5
rs2582753	2	191216109		1.34 (1.18 to 1.52)	4.7×10−6
rs9874888	3	60016317		0.76 (0.67 to 0.85)	5.3×10−6
rs11693602	2	161224658	RBMS1	0.74 (0.65 to 0.84)	4.0×10−6
rs4788837	17	72466219		0.78 (0.70 to 0.88)	2.2×10−5
rs228787	17	42099488		1.36 (1.18 to 1.57)	1.7×10−5
rs11178602	12	71491505		1.18 (1.04 to 1.34)	1.1×10−2
rs1981496	14	106645846		0.71 (0.60 to 0.84)	1.1×10−4
rs13244625	7	2206690		1.30 (1.13 to 1.49)	1.5×10−4
rs1208611	10	38160499		1.56 (1.29 to 1.89)	6.5×10−6
rs4132670	10	114767771	TCF7L2	1.36 (1.16 to 1.59)	2.0×10−4
rs1708558	6	67049406		0.75 (0.65 to 0.87)	1.6×10−4
rs10885409	10	114808072	TCF7L2	0.90 (0.77 to 1.04)	1.6×10−1
rs4760786	12	71446789		0.86 (0.75 to 0.98)	2.5×10−2
rs2154490	21	30915962		1.26 (1.12 to 1.43)	1.7×10−4
rs11688935	2	189175905		1.26 (1.13 to 1.41)	4.4×10−5
rs2239930	17	10558733		1.26 (1.12 to 1.43)	2.0×10−4

Chr, chromosome; Position (bp), physical position on the chromosome expressed in terms of base pairs; SNP, single nucleotide polymorphism.