Table 1.
M.I and C.I. resulting from knockdown of every potential Rab-GAP protein during BC migration
Drosophila identifier | Common name | dsRNA (VDRC no.) | M.I. | C.I. | n | Human orthologue |
CG1093 | Pollux | 27335 | N/A | N/A | N/A | TBC1D1 and TBC1D4 |
106969 | 0.98 | 0.95 | 20 | |||
CG1695 | CG1695 | 20340 | 0.88 | 0.69 | 29 | SGSM1-2 |
48062 | 0.98 | 0.95 | 22 | |||
106947 | 0.875 | 0.74 | 34 | |||
CG4041 | CG4041 | 34780 | 0.83 | 0.67 | 3 | TBCK |
108887 | 0.98 | 0.95 | 55 | |||
CG4552 | CG4552 | 40538 | 0.51 | 0.30 | 41 | TBC1D23 |
110700 | 0.98 | 0.96 | 47 | |||
CG5337 | CG5337 | 22070 | 0.99 | 0.94 | 17 | TBC1D16 |
22069 | 0.96 | 0.90 | 20 | |||
110067 | 1.00 | 1.00 | 20 | |||
CG5344 | Whacked | 22081 | 0.96 | 0.92 | 24 | TBC1D10A-B-C |
22082 | 0.88 | 0.75 | 44 | |||
CG5745 | CG5745 | 35034 | 0.97 | 0.93 | 45 | TBC1D22A-B |
35036 | 0.94 | 0.84 | 32 | |||
108659 | 1.00 | 1.00 | 21 | |||
CG5916 | CG5916 | 110561 | 0.95 | 0.90 | 20 | TBC1D6 |
CG5978 | CG5978 | 21000 | 0.98 | 0.94 | 72 | TBC1D13 |
21001 | 0.97 | 0.92 | 38 | |||
110396 | 0.97 | 0.93 | 28 | |||
CG6182 | CG6182 | 14705 | 0.88 | 0.78 | 32 | TBC1D7 |
14706 | 0.97 | 0.93 | 15 | |||
106667 | 0.98 | 0.94 | 34 | |||
CG7061a | CG7061 | 27823 | 0.97 | 0.94 | 17 | RAB3GAP2 |
27824 | 0.88 | 0.79 | 39 | |||
106905 | 0.54 | 0.41 | 39 | |||
CG7112 | GapcenAb | 35174 | 0.92 | 0.82 | 91 | RAB-GAP1(GAPCENA) and TBC1D18 |
103588 | 0.97 | 0.93 | 61 | |||
CG7324 | CG7324 | 32929d | 0.96 | 0.89 | 232 | TBC1D8B-9B |
CG7742 | CG7742 | 25535 | 1.00 | 1.00 | 16 | TBC1D19 |
25536 | 0.99 | 0.97 | 32 | |||
100125 | 0.99 | 0.96 | 28 | |||
CG8085 | RN-tre | 28192ce | 0.56 | 0.36 | 96 | RNTRE (USP6NL), TBC1D28, USP6, TBC1D3F-G-H |
28194c | 0.65 | 0.42 | 73 | |||
108670 | 0.87 | 0.75 | 60 | |||
CG8155 | CG8155 | 24218 | 0.85 | 0.75 | 28 | TBC1D25 |
24221 | 0.58 | 0.42 | 31 | |||
108444 | 0.99 | 0.95 | 22 | |||
CG8449 | CG8449 | 24102 | 1.00 | 1.00 | 17 | TBC1D5 |
CG9339 | CG9339 | 44655 | 0.99 | 0.98 | 42 | TBC1D24 |
108736 | 0.99 | 0.96 | 23 | |||
CG11490 | Tbc1d15-17b | 20040 | 0.95 | 0.90 | 66 | TBC1D15-17 |
1096668 | 0.94 | 0.84 | 51 | |||
CG11727 | Evi5b | 17548 | 0.76 | 0.61 | 85 | EVI5 and EVI5L |
17549e | 0.32 | 0.14 | 161 | |||
105146 | 0.88 | 0.73 | 49 | |||
CG12241 | CG12241 | 33729d | 0.95 | 0.90 | 201 | SGSM3 |
CG16896 | CG16896 | 20315 | 0.82 | 0.76 | 17 | WDR67 |
20316 | 0.97 | 0.88 | 18 | |||
107134 | 0.91 | 0.81 | 43 | |||
CG17883 | CG17883 | 30277 | 0.94 | 0.83 | 30 | TBC1D20 |
CG32506 | CG32506 | 28776d | 0.96 | 0.89 | 232 | SGSM1-2 |
CG32580 | CG32580 | 105591 | 0.99 | 0.96 | 24 | MUC16 |
CG33715 | Msp-300 | 25906 | 0.97 | 0.92 | 83 | SYNE1-2 and CLMN |
40143 | 1.00 | 1.00 | 12 | |||
40145 | 0.98 | 0.95 | 42 | |||
50192 | 0.71 | 0.58 | 19 | |||
107183 | 0.99 | 0.98 | 56 | |||
109023 | 0.97 | 0.93 | 29 | |||
CG42795 | CG42795 | 17314 | 0.95 | 0.90 | 73 | TBC1D30 |
108779 | 0.98 | 0.93 | 29 |
N/A, not applicable: this dsRNA line affects drastically the morphology of the egg chamber. VDRC, Vienna Drosophila RNAi Center.
This Rab-GAP protein does not have a TBC domain.
These common names have been introduced in this study.
Crosses were performed at 25°C to minimize morphological phenotypes.
Lines obtained from TRiP at Harvard Medical School.
This RNAi fly line is used subsequently is this study.