Figure 5. Antimicrobial resistance genotypes and phenotypes.
UPGMA dendrogram displaying clustering and genetic similarity (using Jaccard’s coefficient) of antimicrobial resistance gene profiles of analysed strains. Black box – positive; grey – ambiguous; white/blank – negative. The far right column shows antimicrobial resistance phenotype. PEN, penicillin; FOX, cefoxitin; GEN, gentamicin; KAN, kanamycin; SPE, spectinomycin; CLI, clindamycin; ERY, erythromycin; CIP, ciprofloxacin; CHL, chloramphenicol; FFC, florfenicol; TET, tetracycline; TIA, tiamulin; TMP, trimethoprim; i, inducible.
