Table 4. Superimposing proteins based on partial matches (Ser195, His57, Ser214 from PDBid:1B0F) and (Ser49, His48, Tyr36 from PDBid:1CFE).
Atom | Before | After | |||||
Coordinates | X | Y | Z | X | Y | Z | |
PDB: 1B0F (template) | Ser195/OG | 64.4 | 57 | 53.8 | 0 | 0 | 0 |
His57/ND1 | 63.3 | 54.8 | 58.2 | 5 | 0 | 0 | |
Ser214/OG | 63.6 | 50.6 | 56.1 | 5 | 4.7 | 0 | |
PDB: 1CFE(target) | Ser49/OG | 8.8 | −6.3 | −4.8 | 0 | 0 | 0 |
His48/ND1 | 9.2 | −2.4 | −1.8 | 4.9 | 0 | 0 | |
Tyr36/OH | 13.7 | −1.6 | −3.7 | 4.7 | 5 | 0 |
After applying linear and rotational transformations on both proteins, Ser195 and Ser49 lie at the center of the coordinate axis, His57 and His48 lie on the -X-Y axis (Y = 0) and Ser214 and Tyr36 lie on the X–Y plane (Z = 0).