Table 5.
The Accession Number (in the PLACE Database), Average Occurrence Frequency (Total Number of Occurred Cis-Elements Divided by That of Promoters), Core Sequence, Putative Function, and Reference of the 10 Most Abundant and Annotated Cis-Elements in Promoters of 31 Calcium Transporter Genes (14 ATPases and 16 Exchangers)
| S. No. | Accession number | Elements | DNA sequence | Average occurrence frequency in ATPases | Average occurrence frequency in exchangers | Putative function |
|---|---|---|---|---|---|---|
| 1 | S000265 | DOFCORE | AAAG | 7.428571 | 4.75 | Core site required for binding of Dof proteins |
| 2 | S000144 | E BOX | CANNTG | 4.214286 | 4.1875 | Found in storage-protein promoter of seeds |
| 3 | S000407 | MYCCONSENS | CANNTG | 4.214286 | 4.1875 | MYC recognition site found in the promoters of the dehydration-responsive gene |
| 4 | S000415 | ACGTATERD1 | ACGT | 2.428571 | 2.1875 | ACGT sequence required for etiolation-induced expression of erd1 (early response to dehydration) |
| 5 | S000501 | CGCG BOX | VCGCGB | 2.142857 | 2.1875 | Ca2+/calmodulin binding box |
| 6 | S000176 | MYB CORE | CNGTTR | 1.928571 | 1.375 | Binding site for MYB |
| 7 | S000453 | GT1GMSCAM4 | GAAAAA | 1.357143 | 0.8125 | Found in the promoter of some CaM isoform |
| 8 | S000103 | SEF4 MOTIF | RTTTTTR | 1.142857 | 0.75 | Soybean embryo factor binding site |
| 9 | S000292 | DPBF CORE | ACACNNG | 1.071429 | 0.8125 | DPBF (Dc3 promoter-binding factor-1 and −2) binding core sequence, embryo-specific expression |
| 10 | S000453 | ABRELATERD1 | GAAAAA | 0.642857 | 0.8125 | ABRE-like sequence required for etiolation-induced expression of erd1 (early response to dehydration) |