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. 2012 Jul;16(7-8):402–413. doi: 10.1089/omi.2012.0004

Table 5.

The Accession Number (in the PLACE Database), Average Occurrence Frequency (Total Number of Occurred Cis-Elements Divided by That of Promoters), Core Sequence, Putative Function, and Reference of the 10 Most Abundant and Annotated Cis-Elements in Promoters of 31 Calcium Transporter Genes (14 ATPases and 16 Exchangers)

S. No. Accession number Elements DNA sequence Average occurrence frequency in ATPases Average occurrence frequency in exchangers Putative function
 1 S000265 DOFCORE AAAG 7.428571 4.75 Core site required for binding of Dof proteins
 2 S000144 E BOX CANNTG 4.214286 4.1875 Found in storage-protein promoter of seeds
 3 S000407 MYCCONSENS CANNTG 4.214286 4.1875 MYC recognition site found in the promoters of the dehydration-responsive gene
 4 S000415 ACGTATERD1 ACGT 2.428571 2.1875 ACGT sequence required for etiolation-induced expression of erd1 (early response to dehydration)
 5 S000501 CGCG BOX VCGCGB 2.142857 2.1875 Ca2+/calmodulin binding box
 6 S000176 MYB CORE CNGTTR 1.928571 1.375 Binding site for MYB
 7 S000453 GT1GMSCAM4 GAAAAA 1.357143 0.8125 Found in the promoter of some CaM isoform
 8 S000103 SEF4 MOTIF RTTTTTR 1.142857 0.75 Soybean embryo factor binding site
 9 S000292 DPBF CORE ACACNNG 1.071429 0.8125 DPBF (Dc3 promoter-binding factor-1 and −2) binding core sequence, embryo-specific expression
10 S000453 ABRELATERD1 GAAAAA 0.642857 0.8125 ABRE-like sequence required for etiolation-induced expression of erd1 (early response to dehydration)