Table 1. The data structure that was used to capture the interactome data.
Field | Description |
GeneID | The unique identifier for a given gene (Rv ID and NCBI Gene ID) |
Gene Name | Assigned name of the gene |
Pathway | Biological role of the gene |
Gene function | The biological function of the gene |
Interacting Partners | All the interacting partners for a given gene |
Type of Interaction | Type of interaction (protein-protein [p-p], protein-nucleotide [p-n]) |
Nature of Interaction | This field contains nature of interaction, such as structural complex, regulatory, signaling etc. |
Method of Inferring Interaction | Contains information about the experimental or computational methods used for the inference of interacting partners |
Type of Evidence | Type of evidence, adopted from Gene Ontology (IDA, IPI, ISO, TAS, etc) |
PUBMED/Link of source | PubMed ID or any web based link from where the interaction and other annotation details were inferred |
Email of author | E-mail address of curator |
There were 11 annotation fields for reporting annotations. The data is available in PSI MITAB format.