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. Author manuscript; available in PMC: 2012 Aug 1.
Published in final edited form as: Nat Genet. 2011 Jul 10;43(8):785–791. doi: 10.1038/ng.882

Figure 2.

Figure 2

Regional plots of four of the associated SNPs at 5p15 (a.), 3q25 (b.), 5p12 (c.), and 6p21 (d.). Plots show the genomic regions associated with PrCa and −log10 association P values of SNPs. Also shown are the SNP build 36/hg18 coordinates in kilobases, recombination rates and genes in the region. The intensity of red shading indicates the strength of LD (r2) with the index SNP. Plots drawn with a modified Rscript from http://www.broadinstitute.org/mpg/snap/ldplot.php