Table 2. Dependence of the Capture tcapture and Translocation tD Times for 3′ss-poly(dA)12 Translocation Across Cylindrical Channel on the Diffusion Constant and Force-Field Parameter ε.
D(Å2/ps) | ε (kcal/mol) | Vmp (mV) | tcapture (ns) | tD (ns) |
---|---|---|---|---|
1.0 × 10–2 | 0.01839 | 0.9 | 1.5 | 83.2 |
0.5 × 10–2 | 0.01839 | 0.9 | 19.3 | 171.1 |
1.0 × 10–2 | 0.1839 | 0.9 | 1.0 | 80.2 |
0.5 × 10–2 | 0.1839 | 0.9 | 1.1 | 193.1 |
1.0 × 10–3 | 0.1839 | 0.9 | 1.4 | 1264.3 |
1.0 × 10–2 | 1.839 | 0.9 | 33.7 | 114.7 |
0.5 × 10–2 | 1.839 | 0.9 | 41.3 | 221.8 |
1.0 × 10–2 | 0.1839 | 0.3 | 35.5 | 303.2 |
0.5 × 10–2 | 0.1839 | 0.3 | 222.1 | 610.2 |