Table 1.
Previously Reported Loci Showing Associations with QTc Interval in the Phase 1 GWAS
| Gene | GWAS SNP | Effect Size (β) in ms |
95% Confidence Interval |
GWAS p | Reported SNP | Effect Size (β) in ms |
95% Confidence Interval |
Reported p | Study Population | Distance from GWAS SNP (bp) |
LD States |
|||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lower | Upper | Lower | Upper | r2 | D′ | |||||||||
| NOS1AP | rs4657175 | 1.709 | 1.156 | 2.261 | 1.4 × 10−9 | rs4657178 | 2.19 | 1.76 | 2.62 | 7 × 10−33 | QTSCD | 14,873 | 0.53 | 0.97 |
| NDRG4-CNOT1 | rs37060 | 1.52 | 0.957 | 2.084 | 1.3 × 10−7 | rs37060 | 1.75 | 1.41 | 2.09 | 3 × 10−25 | QTGEN | 0 | 1 | 1 |
| KCNQ1 | rs16928297 | 1.105 | 0.5582 | 1.653 | 7.6 × 10−5 | rs12296050 | 1.49 | 0.95 | 1.93 | 3 × 10−17 | QTSCD | 3,222 | 0.91 | 1 |
| PLN | rs7764093 | 0.869 | 0.2894 | 1.449 | 0.00331 | rs11970286 | 1.64 | 1.25 | 2.03 | 2 × 10−24 | QTSCD | −11,930 | 0.57 | 0.96 |
| SCN5A | rs2268755 | 0.805 | 0.2663 | 1.344 | 0.00341 | rs12053903 | 1.23 | 0.88 | 1.57 | 1 × 10−14 | QTGEN | 91,477 | 0.597 | 0.79 |
| KCNH2 | rs2968854 | 1.632 | 0.416 | 2.848 | 0.00853 | rs2968863 | 1.35 | 0.98 | 1.8 | 2 × 10−15 | QTSCD | −14,697 | 0.55 | 0.74 |
The following abbreviations are used: GWAS, genome-wide association study, and LD, linkage disequilibrium.