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. 2012 Jul 13;91(1):180–184. doi: 10.1016/j.ajhg.2012.05.019

Table 1.

Previously Reported Loci Showing Associations with QTc Interval in the Phase 1 GWAS

Gene GWAS SNP Effect Size (β) in ms 95% Confidence Interval
GWAS p Reported SNP Effect Size (β) in ms 95% Confidence Interval
Reported p Study Population Distance from GWAS SNP (bp) LD States
Lower Upper Lower Upper r2 D′
NOS1AP rs4657175 1.709 1.156 2.261 1.4 × 10−9 rs4657178 2.19 1.76 2.62 7 × 10−33 QTSCD 14,873 0.53 0.97
NDRG4-CNOT1 rs37060 1.52 0.957 2.084 1.3 × 10−7 rs37060 1.75 1.41 2.09 3 × 10−25 QTGEN 0 1 1
KCNQ1 rs16928297 1.105 0.5582 1.653 7.6 × 10−5 rs12296050 1.49 0.95 1.93 3 × 10−17 QTSCD 3,222 0.91 1
PLN rs7764093 0.869 0.2894 1.449 0.00331 rs11970286 1.64 1.25 2.03 2 × 10−24 QTSCD −11,930 0.57 0.96
SCN5A rs2268755 0.805 0.2663 1.344 0.00341 rs12053903 1.23 0.88 1.57 1 × 10−14 QTGEN 91,477 0.597 0.79
KCNH2 rs2968854 1.632 0.416 2.848 0.00853 rs2968863 1.35 0.98 1.8 2 × 10−15 QTSCD −14,697 0.55 0.74

The following abbreviations are used: GWAS, genome-wide association study, and LD, linkage disequilibrium.