Table IV.
Expression patterns of genes with different levels of phylogenetic conservation.
| Phylogenetic classes of N. crassagenome (9127 genes)* | No difference between Mat-A and - a | Mat-A no change | Mat-a no change | Other differences | SUM** | |||
|---|---|---|---|---|---|---|---|---|
|
|
||||||||
| Mat-a up | Mat-a down | Mat-A up | Mat-A down | |||||
| NC orphans (24%) | 301 | 14 | 21 | 48 | 43 | 60 | 186 (11%) | 487 (12%) |
| Pezizo-specific (35%) | 701 | 39 | 79 | 127 | 84 | 151 | 480(27%) | 1181 (28%) |
| Ascomycota-core (2%) | 38 | 1 | 4 | 5 | 2 | 8 | 20 (1%) | 58 (1%) |
| Dikarya-core (11%) | 301 | 21 | 32 | 50 | 52 | 63 | 218 (11%) | 519 (12%) |
| Euk/Prok-core (26%) | 1000 | 64 | 164 | 194 | 123 | 257 | 802 (47%) | 1802 (43%) |
| others (2%) | 52 | 4 | 7 | 12 | 9 | 15 | 47 (3%) | 99 (2%) |
| 143 (8%) | 307 (18%) | 388 (24%) | 313 (18%) | 554 (32%) | 1705 | |||
| 2339 (59%) | 143 (3%) | 307 (8%) | 388 (9%) | 313 (8%) | 554 (13%) | 4146 analyzed | ||
*
Follows Kasuga et al. (2009).
**
Percentage of genes detected for each category was calculated based on total genes analyzed (4146 genes) and genes (highlighted) showing different expression patterns between mating types (1705 genes).