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. 2012 Jun 7;13(6):6924–6943. doi: 10.3390/ijms13066924

Table 10.

Molecular descriptors calculated by PaDEL.

Descriptor Type Descriptor ID Class
AcidicGroupCount nAcid 2D
ALOGP ALogP, ALogP2, AMR 2D
APol apol 2D
Aromatic atoms count naAromAtom 2D
Aromatic bonds count nAromBond 2D
Atom count nAtom, nHeavyAtom, nH, nB, nC, nN, nO, nS, nP, nF, nCl, nBr, nI 2D
BasicGroupCount nBase 2D
BondCount nBonds, nBonds2, nBondsS, nBondsS2, nBondsS3, nBondsD, nBondsD2, nBondsT, nBondsQ 2D
BPol bpol 2D
Carbon types C1SP1, C2SP1, C1SP2, C2SP2, C3SP2, C1SP3, C2SP3, C3SP3, C4SP3 2D
HBondAcceptorCount nHBAcc, nHBAcc2, nHBAcc3, nHBAcc_Lipinski 2D
HBondDonorCount nHBDon, nHBDon_Lipinski 2D
LargestChain nAtomLC 2D
LargestPiSystem nAtomP 2D
LongestAliphaticChain nAtomLAC 2D
MannholdLogP MLogP 2D
McGowanVolume McGowan_Volume 2D
MLFER MLFER_A, MLFER_BH, MLFER_BO, MLFER_S, MLFER_E, MLFER_L 2D
Ring count nRing, n3Ring, n4Ring, n5Ring, n6Ring, n7Ring, n8Ring, n9Ring, n10Ring, n11Ring, n12Ring, nG12Ring, nFRing, nF4Ring, nF5Ring, nF6Ring, nF7Ring, nF8Ring, nF9Ring, nF10Ring, nF11Ring, nF12Ring, nFG12Ring, nTRing, nT4Ring, nT5Ring, nT6Ring, nT7Ring, nT8Ring, nT9Ring, nT10Ring, nT11Ring, nT12Ring, nTG12Ring 2D
Rotatable bonds count nRotB 2D
Rule of five LipinskiFailures 2D
Topological polar surface area TopoPSA 2D
van der Waals volume VABC 2D
Weight MW 2D
XLogP XLogP 2D
Charged partial surface area PPSA-1, PPSA-2, PPSA-3, PNSA-1, PNSA-2, PNSA-3, DPSA-1, DPSA-2, DPSA-3, FPSA-1, FPSA-2, FPSA-3, FNSA-1, FNSA-2, FNSA-3, WPSA-1, WPSA-2, WPSA-3, WNSA-1, WNSA-2, WNSA-3, RPCG, RNCG, RPCS, RNCS, THSA, TPSA, RHSA, RPSA 3D
Moment of inertia MOMI-X, MOMI-Y, MOMI-Z, MOMI-XY, MOMI-XZ, MOMI-YZ, MOMI-R 3D
Pubchem fingerprint Hierarchal element counts
Rings in a canonic Extended Smallest Set of Smallest Rings (ESSSR) ring set
Simple atom pairs
Simple atom nearest neighbours
Detailed atom neighbourhoods
Simple SMARTS patterns
Complex SMARTS patterns
fingerprint
Substructure fingerprint - fingerprint
Substructure fingerprint count -