Table 5.
GO process terms significantly over-represented in the newly predicted GO set compared to complete set of GO terms.
| GO ID | GO name | Frequency | p-Value |
|---|---|---|---|
| GO:0006730 | one-carbon metabolic process | 364 | 0.00000 |
| GO:0009132 | nucleoside diphosphate metabolic process | 74 | 0.00000 |
| GO:0009123 | nucleoside monophosphate metabolic process | 72 | 0.00000 |
| GO:0009141 | nucleoside triphosphate metabolic process | 71 | 0.00000 |
| GO:0006353 | transcription termination, DNA-dependent | 88 | 1.11022 × 10−16 |
| GO:0019538 | protein metabolic process | 87 | 1.11022 × 10−16 |
| GO:0022900 | electron transport chain | 354 | 2.22045 × 10−16 |
| GO:0006793 | phosphorus metabolic process | 324 | 2.22045 × 10−16 |
| GO:0009061 | anaerobic respiration | 135 | 2.22045 × 10−16 |
| GO:0009307 | DNA restriction-modification system | 73 | 2.22045 × 10−16 |
| GO:0006662 | glycerol ether metabolic process | 277 | 3.33067 × 10−16 |
| GO:0015074 | DNA integration | 157 | 3.33067 × 10−16 |
| GO:0019419 | sulfate reduction | 86 | 3.33067 × 10−16 |
| GO:0051090 | regulation of sequence-specific DNA binding transcription factor activity | 64 | 3.33067 × 10−16 |
| GO:0006139 | nucleobase-containing compound metabolic process | 336 | 4.44089 × 10−16 |
| GO:0006259 | DNA metabolic process | 169 | 4.44089 × 10−16 |
| GO:0006313 | transposition, DNA-mediated | 113 | 4.44089 × 10−16 |
| GO:0006797 | polyphosphate metabolic process | 672 | 5.55112 × 10−16 |
| GO:0006796 | phosphate-containing compound metabolic process | 643 | 5.55112 × 10−16 |
| GO:0000103 | sulfate assimilation | 603 | 5.55112 × 10−16 |
| GO:0044238 | primary metabolic process | 548 | 5.55112 × 10−16 |
| GO:0006281 | DNA repair | 246 | 5.55112 × 10−16 |
| GO:0006413 | translational initiation | 156 | 5.55112 × 10−16 |
| GO:0009116 | nucleoside metabolic process | 107 | 5.55112 × 10−16 |
| GO:0044255 | cellular lipid metabolic process | 444 | 6.66134 × 10−16 |
| GO:0044262 | cellular carbohydrate metabolic process | 317 | 6.66134 × 10−16 |
| GO:0001121 | transcription from bacterial-type RNA polymerase promoter | 273 | 6.66134 × 10−16 |
| GO:0006302 | double-strand break repair | 200 | 6.66134 × 10−16 |
| GO:0009225 | nucleotide-sugar metabolic process | 177 | 6.66134 × 10−16 |
| GO:0006310 | DNA recombination | 170 | 6.66134 × 10−16 |
| GO:0006260 | DNA replication | 156 | 6.66134 × 10−16 |
| GO:0006396 | RNA processing | 109 | 6.66134 × 10−16 |
| GO:0015977 | carbon fixation | 534 | 7.77161 × 10−16 |
| GO:0042126 | nitrate metabolic process | 477 | 7.77156 × 10−16 |
| GO:0006082 | organic acid metabolic process | 244 | 7.77156 × 10−16 |
| GO:0006266 | DNA ligation | 150 | 7.77156 × 10−16 |
| GO:0006104 | succinyl-CoA metabolic process | 144 | 7.77156 × 10−16 |
| GO:0009060 | aerobic respiration | 118 | 7.77156 × 10−16 |
| GO:0006352 | transcription initiation, DNA-dependent | 112 | 7.77156 × 10−16 |
| GO:0044249 | cellular biosynthetic process | 618 | 8.88178 × 10−16 |
| GO:0006351 | transcription, DNA-dependent | 333 | 8.88178 × 10−16 |
| GO:0009399 | nitrogen fixation | 271 | 8.88178 × 10−16 |
| GO:0016042 | lipid catabolic process | 107 | 8.88178 × 10−16 |
| GO:0009117 | nucleotide metabolic process | 101 | 8.88178 × 10−16 |
| GO:0043620 | regulation of DNA-dependent transcription in response to stress | 96 | 8.88178 × 10−16 |
| GO:0001522 | pseudouridine synthesis | 92 | 8.88178 × 10−16 |
| GO:0006314 | intron homing | 137 | 9.99201 × 10−16 |
| GO:0006066 | alcohol metabolic process | 635 | 1.11022 × 10−15 |
| GO:0090305 | nucleic acid phosphodiester bond hydrolysis | 222 | 1.11022 × 10−15 |
| GO:0006284 | base-excision repair | 212 | 1.11022 × 10−15 |
| GO:0006289 | nucleotide-excision repair | 210 | 1.33227 × 10−15 |
| GO:0009451 | RNA modification | 101 | 1.33227 × 10−15 |
| GO:0008610 | lipid biosynthetic process | 184 | 1.66534 × 10−15 |
| GO:0044267 | cellular protein metabolic process | 58 | 3.66374 × 10−15 |
| GO:0006268 | DNA unwinding involved in replication | 53 | 7.32747 × 10−15 |
| GO:0006270 | DNA-dependent DNA replication initiation | 52 | 1.36557 × 10−14 |
| GO:0006412 | translation | 207 | 4.56302 × 10−14 |
| GO:0031554 | regulation of transcription termination, DNA-dependent | 50 | 5.19584 × 10−14 |
| GO:0030261 | chromosome condensation | 56 | 1.21125 × 10−13 |
| GO:0006801 | superoxide metabolic process | 693 | 2.91767 × 10−13 |
| GO:0000725 | recombinational repair | 46 | 8.03135 × 10−13 |