TABLE 1.
UV extinction coefficient A2800.1%a | Estimatedb (dn/dc)glycoprotein d | Expected MMproteinc of monomer | MMproteinfrom SEC-UV/MALS/RIe,f | Calculated stoichiometry | MMglycan from SEC-UV/MALS/RI | MMglycoprotein from SEC-UV/MALS/RI | Hydrodynamic radius, rHf | |
---|---|---|---|---|---|---|---|---|
ml mg−1cm−1 | ml/g | g/mol | g/mol | nm | ||||
Untreated SOSIP.664GnTl−/− | 1,649 | 0.168 | 74,332.6 | 220,600 | 2.97 | 173,500 | 394,200 | 12.3 |
Endo H-treated SOSIP.664GnTl−/− | 1,649 | 0.179 | 74,332.6 | 223,500 | 3.01 | 36,500 | 260,000 | 9.9 |
a Extinction coefficient at 280 nm measured in water.
b Refractive index increment value.
c Molar mass.
d From the basic principles of molar mass determination by light scattering, it follows that any ± 1% error in the dn/dc value will propagate as a corresponding ± 1% error in the calculated molar mass (59).
e For SEC-UV/MALS/RI analysis of glycoproteins, a typical error is ± 10%. The source of uncertainty predominantly arises from the amount of sample analyzed and the stability of the system (59).
f Errors propagated in the various calculations performed by Astra V range between 0.2 and 50%.