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. 2012 Jul 16;7(7):e40885. doi: 10.1371/journal.pone.0040885

Table 2. Partial oligonucleotides used in this study.

Names Sequences(5′ to 3′)* Purposes
P1 GCGAATTCAGCTTTATTGAATTTTATGAG P1/P2:BD-Tt-RpoE1
P2 TCGGATCCTCATCCCTCCAAACATTT
P3 TCCTCGAGTCATCCCTCCAAACATTT P1/P3: p28Tt-RpoE1
P4 ATGAATTCCGGCGAGTTTCAGCAAGT P4/P2: pPTt-RopE1-T
P5 AGGAATTCGACGAAAAGAGAATAGAG P5/P6: AD-Tt-TolB
P6 TTGGATCCGTATTAAAACCTGCCCTT
P7 CTCTCGAGTATCTTTTTCCATCTGTT P5/P7: AD-Tt-TolBN
P8 AGGAATTCCAAGATAATTTAATAACA P8/P6: AD-Tt-TolBC
P9 ACGAATTCATGGACGAAAAGAGAATAGA P9/P10: p28Tt-TolB
P10 CTCTCGAGGTATTAAAACCTGCCCTT P8/P10: p28Tt-TolB-C
P11 TGGAATTCAGTACTAGCTCTTTGATTTT P11/P12: AD-Permase
P12 TGGGATCCGGCCTGCCTTAGTTGATG
P13 CGGAATTCGTGGAAATAGAGCTTAAAAA P13/P14: AD-PtsB
P14 CGGGATCCTCACTTTATCATCTCCTTTA P4/P15 for transcription template
P15 CTTTGAGTTTGATTTTAC
P16 ACCGGTACACATCGTCAAAGTTTT For primer extension
P17 CCGAAATACTGTGACAGCCTATTACAGAATGAGGA P17/18: D66A of p28Tt-RpoE1
P18 TCCTCATTCTGTAATAGGCTGTCACAGTATTTCGG
P39 TTTTGTGTAGATTTTTGTCTATAAAGGTGGGAGGAG P39/40:mutation at −13C of transcription template
P40 CTCCTCCCACCTTTATAGACAAAAATCTACACAAAA
P41 TTTGTGTAGATTTTCTTCTATAAAGGTGGGAGGAGT P41/42:mutation at −12G of transcription template
P42 ACTCCTCCCACCTTTATAGAAGAAAATCTACACAAA
P43 TTGTGTAGATTTTCGCCTATAAAGGTGGGAGGAGTC P43/44:mutation at −11T of transcription template
P44 GACTCCTCCCACCTTTATAGGCGAAAATCTACACAA
P45 TGTGTAGATTTTCGTTTATAAAGGTGGGAGGAGTCA P45/46:mutation at −10C of transcription template
P46 TGACTCCTCCCACCTTTATAAACGAAAATCTACACA
P47 GTGTAGATTTTCGTCGATAAAGGTGGGAGGAGTCAA P47/48:mutation at −9T of transcription template
P48 TTGACTCCTCCCACCTTTATCGACGAAAATCTACAC
*

Restriction sites are underlined.