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. 2012 Jul 16;7(7):e40996. doi: 10.1371/journal.pone.0040996

Table 1. Identification of the optimal transcript subset for molecular subtype representation.

No. of top transcripts t chosen for each metagene Transcript subseta Adjusted Rand Index (ARI) No. of sample misclassification
50 137 0.94596 4
100 255 0.92589 5
150 366 0.9869 1
200 475 0.97929 2
250 583 0.97929 2
300 681 0.97929 2
400 846 0.97929 2
800 1116 1 0
a

Number of transcripts that are union of the top t x 3 transcripts for 3 metagenes.