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. Author manuscript; available in PMC: 2012 Jul 17.
Published in final edited form as: Nature. 2009 Dec 24;462(7276):1005–1010. doi: 10.1038/nature08645

Table 3.

Expressed in-frame fusion genes found in the 24 breast cancers

Sample
name		 5′
gene		 3′
gene		 Sample
name		 5′
gene		 3′
gene
HCC1187b PLXND1 TMCC1 HCC2157 SMYD3 ZNF695
HCC1187 RGS22 SYCP1 HCC38 ACBD6 RRP15
HCC1395 EFTUD2 KIF18B HCC38 LDHC SERGEF
HCC1395 ERO1L FERMT2 HCC38 MBOAT2 PRKCE
HCC1395a KCNQ5 RIMS1 HCC38 SLC26A6 PRKAR2A
HCC1395 PLA2R1 RBMS1 HCC38 SMF PPARGC1B
HCC1599 CYTH1 PRPSAP1 PD3664a RAF1 DAZL
HCC1937 NFIA EHF PD3670a AC141586.2 CCNF
HCC1954 STRADB NOP58 PD3670a SEPT8 AFF4
HCC2157 INTS4 GAB2 PD3688a ETV6 ITPR2
HCC2157 RASA2 ACPL2 PD3693aa HN1 USH1G

Gene accession numbers and exons fused are outlined in Supplementary Table 6.

a

Gene fusion is amplified.

b

Predicted to be an out-of-frame gene fusion. However, RT-PCR across the exon-exon fusion boundary demonstrated both an out-of-frame and an in-frame gene fusion due to alternative splicing.