Skip to main content
. 2012 Apr 17;63(11):4191–4212. doi: 10.1093/jxb/ers103

Fig. 1.

Fig. 1.

In silico analysis of coffee ESTs overexpressed under drought conditions. (A) ESTs exclusively overexpressed in the leaves of drought-tolerant clone 14 of C. canephora var. Conilon subjected to drought (SH3 cDNA library). The numbers indicate the percentage of reads in the library (n total=5743 reads). Results of TBLASTX against the non-redundant protein sequence database (NR; E-value cut-off of 1e−10) were as follows: CcWRKY2 encoding a WRKY transcription factor (Ricinus communis, XP002529048, E-value 1e−115), CcPSAL1 (GT646615) encoding the photosystem I subunit XI (Nicotiana attenuata, AAO85557, E-value 2e−103), CcELIP2 (GT647647) encoding isoform 2 of a putative early light-induced protein (Ricinus communis, XP002517068, E-value 3e−59), and CcELIP1 encoding isoform 1 of a putative early light-induced protein (Camellia sinensis, ACB20694, E-value 3e−63). No hits were found for the CcUNK1 (DV689820) gene. (B) ESTs from C. canephora mainly overexpressed in the SH3 cDNA library (results of Fisher’s test). Values indicate the percentage of ESTs in the corresponding cDNA libraries. Numbers of other cDNA libraries containing reads are indicated in parentheses. Total reads in SH2 [(1) 5053] and SH3 [(2) 5743]. GenBank accession numbers (GB) and gene names (GN) of coffee ESTs are also given. a, Gene expression analysed by northern blot; b, gene expression analysed by qPCR; *, gene expression not determined.