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. 2012 Apr 17;63(11):4191–4212. doi: 10.1093/jxb/ers103

Table 2.

Identification of leaf coffee proteins presenting differential accumulation during drought acclimation

Protein names and corresponding peptide sequences obtained by MALDI-TOF-MS/MS are indicated and validated statistically by Scaffold Score expressed as a percentage (%). The observed isoelectric point (pI) and molecular weight (MW) were calculated from the 2-DE gels by ImageMaster Platinum 6.0 Software. Homology searches were done with the TBLASTN program (Altschul et al., 1990) using an E-value cut-off of 1e−10. GenBank (GB) and SGN (http://solgenomics.net, Mueller et al., 2005) accession numbers of ESTs and contigs containing the sequenced peptides are indicated.

Protein name Gene name Sequences Scaffold Score (%) Accession nos pI/MW
Carbonic anhydrase CcCA1 EKYETNPALFGQLAK 91 GT008701 6.85/23
YMIVACADSR 85
VNPSLILSLQPGDAFIVR 80
SVANLVPPYDQLK 90
HSEFGAAIEFAVLHLK 70
VENIVVIGHSACGGIK 60
GLMSIPEDGTTSTDFIEDWVK 90
VKTEHGSKPLPEQIVLAE 95
Type-2C protein phosphatase (PP2C) CcPP2C KTSTSLMALSSPQLR 90 GW435032 5.26/22
EEMEDDVIIVR 95 SGN-U631279
ALEEAFESADMK 85
EAGGWISNGR 85
Oxygen-evolving complex PSII (psbO) CcPSBO KDGIDYAAVTVQLPGGERV 90 GT647517 5.46/33
RLTYDEIQSK 74 SGN-U629535
Oxygen-evolving complex PSII (psbP) CcPSBP WNPSKEVEFPGQVLR 90 GW488995 5.76/29
YEDNFDSNSSVSVIIIPCDKK 50
SITDYGPPEEFLSK 95
VDYLLGK 52
TEAEGGFEPNTVATANILEQETPIV 55
TADGDEGGKHQLIR 90
Oxygen-evolving complex PSII (psbQ) CcPSBQ RFFIQALPPAGAAARA 90 GT645658 10.01/15
DLDLPLKDR 74 SGN-U637442
LKAELLR 62
STPEAEKYYAATVSTLNDVLSK 95
YDLNTVISAKPK 90
Small heat shock protein (sHSP) CcHSP1 SAPVAPIGVLDRFPTAR 95 GW447897 5.87/22
TVQQMMETMER 91
NEDGEEEEKNEWSAK 90
LMEDPFAYSGGWPSPLAPDTGGYSR 60
GRTPWEIK 60
ALPENAQF 70