Table 4. Highly represented repeat-related miRNA families in 1AL survey sequences.
| Conserved miRNA | Sequence | Hits passinghairpin criteria | Hits matchingknown repeats | Families of knownrepeats matched1 |
| tae-miR1117 | UAGUACCGGUUCGUGGCACGAACC | 471 | 471 | CACTA, Unknown |
| tae-miR1118 | CACUACAUUAUGGAAUGGAGGGA | 76 | 73 | Mariner |
| hvu-miR1120 tae-miR1120 | ACAUUCUUAUAUUAUGGGACGGAG ACAUUCUUAUAUUAUGAGACGGAG | 220 | 166 | Mariner, CACTA |
| bdi-miR1122 far-miR1122 | UAGAUACAUCCGUAUUUGGA UAGAUACAUCCGUAUCUAGA | 437 | 437 | Mariner |
| tae-miR1125 | AACCAACGAGACCAACUGCGGCGG | 24 | 22 | Mariner |
| tae-miR1126 | UCCACUAUGGACUACAUACGGAG | 72 | 72 | Mariner |
| bdi-miR1127 tae-miR1127 | AACUACUCCCUCCGUCCGAUA UCCUUCCGUUCGGAAUUAC | 14 | 12 | Mariner, CACTA |
| ssp-miR1128 tae-miR1128 | UACUACUCCCUCCGUCCCAAA UACUACUCCCUCCGUCCGAAA | 99 | 97 | Mariner, CACTA |
| tae-miR1130 | CCUCCGUCUCGUAAUGUAAGACG | 66 | 31 | Mariner, CACTA |
| tae-miR1131 | UAGUACCGGUUCGUGGCUAACC | 182 | 182 | CACTA |
| tae-miR1133 | CAUAUACUCCCUCCGUCCGAAA | 61 | 60 | Mariner |
| bdi-miR1135 tae-miR1135 | UUUCGACAAGUAAUUCCGACCGGA CUGCGACAAGUAAUUCCGAACGGA | 201 | 201 | Mariner |
| tae-miR1136 | UUGUCGCAGGUAUGGAUGUAUCUA | 226 | 226 | Mariner |
| tae-miR1137 | UAGUACAAAGUUGAGUCAUC | 146 | 146 | Mariner |
| tae-miR1139 | AGAGUAACAUACACUAGUAACA | 168 | 164 | Harbinger |
| hvu-miR1436 | ACAUUAUGGGACGGAGGGAGU | 397 | 247 | Mariner, CACTA |
| osa-miR1439 | UUUUGGAACGGAGUGAGUAUU | 172 | 172 | Mariner |
| ath-miR5021 | UGAGAAGAAGAAGAAGAAAA | 19 | 19 | Trinucleotide, CACTA |
| bdi-miR5203 | ACUUAUUAUGGACCGGAGGGA | 11 | 9 | Mariner |
1
Repeats were classified using the system proposed by Wicker et al. [29].