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. 2012 Jul 20;7(7):e41247. doi: 10.1371/journal.pone.0041247

Table 2. Plasmids predicted and validated in this study.

Montevideop S5-403-1 Montevideop S5-403-2 Inverness pR8-3668 Rubislaw pA4-653 Mississippi pA4-633 Urbana pR8-2977
Detection method de novo de novo & SIGI-HMM de novo SIGI-HMM de novo de novo
Validation method PCR and sequencing PFGE & long range PCR PCR and sequencing PFGE & long range PCR PCR and sequencing PCR and sequencing
Size (bp) 53,632 299,644 121,190 152,728 122,532 123,020
GC% 52 48 50 52 51 50
ORFs 66 401 193 218 178 202
Replicon type IncN2 IncHI1 IncI1/IncFIB IncI1/IncFIB IncI1/IncFIB IncI1/IncFIB
Plasmid stability genes ardK, ardB, ccgC, cgAI, stbC stbA, EcoR124IIMRS parM, parA, parB parR, parM, hipA klcA, parB, parA, psiB, psiA, hok, relE/parE, kfrAs parA, parB, psiB, psiA klcA, parB, parA, psiB, psiA, hok, relE/ parE, kfrAs klcA, parB, parA, psiB, psiA, hok, relE/parE
Resistance genes sul1,qacEΔ, aacC, aadA, strAB Tn7-like (pcoE, sil, cus), sugE, nodT, ter, tetA - - - -
Virulence genes - - hlyD, eal, adhesin, pefC, ldaA, iroN sopE, adhesin, hemolysin, serine/ threonine phosphatase hlyD, eal, adhesin, pefC, ldaA, iroN hlyD, eal, adhesin, fimCD