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. 2012 Mar 30;21(6):751–768. doi: 10.1002/pro.2069

Table I.

E. coli OMP Substrates Used in the BAM Complex Studiesa

Substrate UniProt ID No. of β-strands MW (kDa) Oligomeric state Function PDB ID Reference
OmpA P0A910 8 37.2 Dimer Porin and receptor 1BXW, 1G90, 1QJP, 2GE4, 2JMM 40
OmpT P09169 10 35.6 Possible pentamerb Protease 1I78 41
Ag43 P39180 12c 106.8 Monomerd Autotransporter (Unsolved) 42
AIDA-I Q03155 12c 132.3 Monomerd Autotransporter (Unsolved) 43
Hbp O88093 12 148.3 Monomerd Autotransporter 1WXR, 3AEH, 3AK5 44
Intimin P43261 12c 101.8 Dimer Autotransporter (β-Barrel unsolved) 45
Pet O68900 12c 139.8 Monomerd Autotransporter (Unsolved) 42
TolC P02930 12 53.7 Trimer Transporter 1EK9, 1TQQ, 2VDD, 2VDE, 2WMZ, 2XMN 40
OmpC P06996 16 40.4 Trimer Porin 2J1N, 2J4U, 2XE1, 2XE2, 2XE3, 2XE5, 2XG6 40
OmpF P02931 16 39.3 Trimer Porin 1BT9, 1GFM, 1GFN, 1GFO, 1GFP, 1GFQ, 1HXT, 1HXU, 1HXX, 1MPF, 1OPF, 2OMF, 2ZFG, 2ZLD, 3FYX, 3HW9, 3HWB, 3K19, 3K1B, 3O0E 40
PhoE P02932 16 38.9 Trimer Porin 1PHO 36
LamB P02943 18 49.9 Trimer Porin 1AF6, 1MAL, 1MPM, 1MPN, 1MPO, 1MPQ 40
FimD P30130 24 96.5 Dimer Transporter 1ZDV, 1ZDX, 1ZE3, 3BWU, 3OHN, 3RFZ 46
a

This table only lists E. coli OMPs that have been shown to require the BAM complex for correct assembly. Although not listed here, it should be noted that OMPs from other species of Gram-negative bacteria such as PilQ and PorA from N. meningitidis have been used in the functional studies of the BAM complex.4

b

Gel filtration analysis of OmpT suggests possible pentamer formation.47

c

Based on currently available structures, most autotransporters are predicted to have 12-stranded β-barrels.

d

These proteins have been classified as monomeric proteins.48