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. 2012 Feb 28;21(5):686–696. doi: 10.1002/pro.2054

Table IV.

Differential Analysis of Charged Surface Residues

H6UctB YfdW FRC
3ubm 1q6y 1p5r
Total residues in dimer 872 832 856
Surface residues in dimera 526 498 503
 No. acidic residues  (Asp & Glu) 93 94 103
 No. basic residues  (Arg, His & Lys) 85 76 90
 No. bases–no. acids −8 −18 −13
 No. of altered side chain  chargesb 32 32 32
  No. making polar protein  contactsc 8 12 16
  No. of charged residues 14 18 18
  No. bases–no. acids +6 −14 −10
Computed isoelectric point
 Compositiond 5.81 5.36 5.26
 Folded proteine 6.60 5.46 5.43
a

Residues with relative side chain accessible surface area of ≥5% in chains A and B, computed using NACCESS.

b

Surface residues that have different charges in 3ubm than in 1q6y/1p5r. A complete residue list is given in Supporting Information Table SII.

c

Residues with side chains that make polar contacts to other side chains, backbone, or ligand. The other residues appear to make polar contacts only to solvent water.

d

Computed using a tool at the EXPASY server.

e

Computed using PROPKA.