Table II.
Dataset | Native | Selenomethionine derivative | |||
---|---|---|---|---|---|
Crystal parameters | |||||
Space group | P6522 | P6522 | |||
Cell dimensions a, c (Å) | 130.79, 147.74 | 131.58, 148.60 | 131.41, 148.31 | 131.59, 148.61 | 131.72, 148.57 |
Data collection | |||||
Wavelength (Å) | 0.9000 | 0.9950 | 0.9793 | 0.9789 | 0.9640 |
Resolution range (Å)a | 20–2.5 | 20–2.7 | 20–2.7 | 20–2.7 | 20–2.7 |
Total reflections | 156019 | 395194 | 388809 | 389697 | 390047 |
Unique reflectionsa | 26252 (1277) | 21282 (1037) | 21353 (1055) | 21258 (1037) | 21387 (1058) |
Rmergeab | 0.081 (0.487) | 0.070 (0.439) | 0.078 (0.436) | 0.083 (0.417) | 0.091 (0.590) |
Average I/σ(I)ac | 11.6 (4.4) | 13.6 (6.2) | 13.1 (6.0) | 13.5 (6.3) | 12.1 (5.7) |
Completenessa | 0.999 (1.000) | 0.999 (1.000) | 0.999 (1.000) | 0.999 (1.000) | 0.999 (1.000) |
Redundancya | 5.9 (6.0) | 18.6 (19.0) | 18.2 (17.9) | 18.3 (18.8) | 18.2 (17.9) |
Refinement | MAD phasing | ||||
Resolution range (Å) | 20–2.5 | No. of selenium sites | 8 | ||
R-factor / free R-factorde | 0.194/0.230 | Mean figure of merit | |||
Atoms in an asymmetric unit | acentric | 0.564 | |||
Protein | 3675 | centric | 0.343 | ||
Ligand (ADP, P-analog, 2 Mg) | 51 | ||||
Water | 147 | ||||
Deviations from ideal geometry | |||||
Bonds distances (Å) | 0.009 | ||||
Angles (°) | 1.295 | ||||
Mean isotropic equivalent B-factors | |||||
Main-chain (Å2) | 22.3 | ||||
Side-chain (Å2) | 23.0 | ||||
Ligand (Å2) | 22.5 | ||||
Water (Å2) | 22.7 | ||||
Ramachandran plotf | |||||
Favored | 0.959 | ||||
Allowed | 0.041 |
Values in parentheses are for highest resolution shells.
Rmerge = ΣhklΣi(|Ii (hkl)- <I(hkl)>|)/ ΣhklΣiIi(hkl).
Signal-to-noise ratio of intensities.
R = Σ(|Fo − Fc|)/ΣFo.
Five percent of reflections were randomly chosen for calculation of free R value.
Values from Rampage.37