Table 4.
Top genes with enriched expression in C+ (cluster IV) and C+C− (cluster V)
| Affy ID | Fold change | Gene symbol | Gene title |
|---|---|---|---|
| C+-enriched genes | |||
| 1441429_at | 20.3 | Irs4 | Insulin receptor substrate 4 |
| 1442724_at | 15.6 | Dlk1 | δ-like 1 homolog (Drosophila) |
| 1455436_at | 13.0 | Diras2 | DIRAS family, GTP-binding RAS-like 2 |
| 1418589_a_at | 11.9 | Mlf1 | Myeloid leukemia factor 1 |
| 1457733_at | 9.7 | — | — |
| 1457635_s_at | 9.6 | Nr3c1 | Nuclear receptor subfamily 3, group C, member 1 |
| 1424250_a_at | 9.3 | Arhgef3 | Rho guanine nucleotide exchange factor (GEF) 3 |
| 1438540_at | 8.8 | Col25a1 | Collagen, type XXV, α 1 |
| 1460482_at | 7.7 | 3110047P20Rik | RIKEN cDNA 3110047P20 gene |
| 1449939_s_at | 7.4 | Dlk1 | δ-like 1 homolog (Drosophila) |
| 1445268_at | 6.1 | — | — |
| 1418756_at | 5.6 | Trh | Thyrotropin-releasing hormone |
| 1456096_at | 5.5 | 6430573F11Rik | RIKEN cDNA 6430573F11 gene |
| 1437868_at | 5.3 | BC023892 | cDNA sequence BC023892 |
| 1441258_at | 5.2 | AF529169 | cDNA sequence AF529169 |
| 1433787_at | 5.2 | Nell1 | NEL-like 1 (chicken) |
| 1423836_at | 5.1 | Zfp503 | Zinc finger protein 503 |
| 1448125_at | 5.0 | Rit2 | Ras-like without CAAX 2 |
| 1427122_at | 4.9 | Copg2as2 | Coatomer protein complex, subunit γ 2, antisense 2 |
| 1439827_at | 4.9 | Adamts12 | A disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12 |
| 1428765_at | 4.7 | Meg3 | Maternally expressed 3 |
| 1417217_at | 4.6 | Magel2 | Melanoma antigen, family L, 2 |
| 1435513_at | 4.4 | Htr2c | 5-Hydroxytryptamine (serotonin) receptor 2C |
| 1449465_at | 4.4 | Reln | Reelin |
| 1427123_s_at | 4.2 | Copg2as2 | Coatomer protein complex, subunit γ 2, antisense 2 |
| C+C−-enriched genes | |||
| 1418415_at | 68.0 | Hoxb5 | Homeobox B5 |
| 1441070_at, 1429019_s_at | 46.0, 5.5 | Hoxb3 | Homeobox B3 |
| 1458622_at, 1455426_at | 39.7, 4.7 | Hoxa5 | Homeobox A5 |
| 1423756_s_at | 33.8 | Hoxc4 | Homeobox C4 |
| 1449368_at, 1421841_at | 23.1, 7.2 | Hoxd3 | Homeobox D3 |
| 1428429_at, 1452421_at | 19.7, 4.2 | Hoxa3 | Homeobox A3 |
| 1451277_at | 17.6 | Hoxc5 | Homeobox C5 |
| 1439885_at | 16.9 | Hoxb6 | Homeobox B6 |
| 1457966_at | 12.5 | Hoxb4 | Homeobox B4 |
| 1438042_at | 10.9 | AI448005 | Expressed sequence AI448005 |
| 1444543_at | 10.1 | — | — |
| 1440177_at, 1434818_at, 1455299_at | 9.8, 8.8, 6.9 | Ttr | Transthyretin |
| 1460379_at | 8.4 | Hoxb2 | Homeobox B2 |
| 1428026_at | 8.1 | Hoxa4 | Homeobox A4 |
| 1416783_at | 7.7 | Tac1 | Tachykinin 1 |
| 1460214_at | 7.6 | Dcn | Decorin |
| 1450209_at | 6.9 | Shox2 | Short stature homeobox 2 |
| 1420401_a_at | 6.9 | Hoxa2 | Homeobox A2 |
| 1456229_at | 5.7 | 0610040B09Rik | RIKEN cDNA 0610040B09 gene |
| 1458470_at | 5.4 | A930038C07Rik | RIKEN cDNA A930038C07 gene |
| 1416561_at | 4.9 | Gad1 | Glutamic acid decarboxylase 1 |
| 1430596_s_at | 4.9 | Sorl1 | Sortilin-related receptor, LDLR class A repeats-containing |
| 1460693_a_at | 4.2 | Hoxb7/Hoxb8 | Homeobox B7/homeobox B8 |
| 1451761_at | 3.9 | — | — |
| 1451461_a_at | 3.9 | — | — |