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. 2012 May 6;12:21. doi: 10.1186/1472-6750-12-21

Table 1.

Sense (F) and antisense (R) oligonucleotides used for PCR amplifications

Primer Sequence (5’ – 3’) Hybridization site
AscI_GI_F
TAGGCGCGCCATGGTCCGTCCTGTAGAA
5’ terminus of GUS-intron
GI_NotI_R
TTGCGGCCGCAGAGGATCCTCATTGTTT
3’ terminus of GUS-intron
Rep_F
GCCTGAGTTTTGTGGTTGG
internal to PVX RdRp
GI_R
GGATAGTCTGCCAGTTCAGTTCG
internal to GUS-intron
GI_XhoI_R
CCTACTCGAGCCTCATTGTTTGCCTCCC
3’ terminus of GUS-intron
PEBVsgPR_F
AACTCGGTTTGCTGACCTAC
PEBV subgenomic promoter
TRV3UTR_R
ACCTAAAACTTCAGACACGG
3’ UTR of TRV RNA-2
AgeI-GI_F
TATAACCGGTCATGGTCCGTCCTGTAGAAACC
5’ terminus of GUS-intron
pEAQ_F
AACGTTGTCAGATCGTGCTTCGGCACC
5’ UTR of pEAQ-HT
pEAQ_R CTCCTGTTTAGCAGGTCGTCCCTTCAG 3’ UTR of pEAQ-HT

Sequences added with 5’ extensions are shown in bold with restriction enzyme recognition sites underlined. Initiation codons are italicized. UTR, untranslated region; PEBV, Pea early browning virus; RdRp, RNA-dependent RNA polymerase.