Table 1.
CSFV isolates selected from EURL virus database.
| catalogue-no.1 | isolate name | subgenotype | year of isolation | country | host2 | GenBank acc. no.3 |
|---|---|---|---|---|---|---|
| CSF0002 |
“Atzbuell” |
2.3 |
1984 |
Germany |
dp |
JQ411559 |
| CSF0014 |
|
2.2 |
1989 |
Germany |
dp |
JQ411560 |
| CSF0021 |
|
2.1 |
1989 |
Germany |
dp |
JQ411561 |
| CSF0073 |
|
2.2 |
1990 |
Austria |
dp |
JQ411562 |
| CSF0083 |
“Rostock I” |
2.3 |
1992 |
Germany |
dp |
JQ411563 |
| CSF0104 |
“Diepholz I” |
2.3 |
1994 |
Germany |
dp |
JQ411564 |
| CSF0120 |
|
2.3 |
1994 |
Austria |
wb |
JQ411565 |
| CSF0277 |
|
2.1 |
1997 |
Germany |
dp |
JQ411566 |
| CSF0283 |
|
2.1 |
1997 |
The Netherlands |
dp |
JQ411567 |
| CSF0290 |
|
2.3 |
1995 |
Poland |
dp |
JQ411568 |
| CSF0291 |
|
2.3 |
1995 |
Poland |
dp |
JQ411569 |
| CSF0306 |
|
1.3 |
1986 |
Malaysia |
dp |
JQ411570 |
| CSF0309 |
“Kanagawa” |
3.4 |
1974 |
Japan |
dp |
JQ411571 |
| CSF0372 |
|
2.3 |
1996 |
Czech Republic |
wb |
JQ411572 |
| CSF0378 |
|
2.2 |
1994 |
Czech Republic |
dp |
JQ411573 |
| CSF0391 |
|
2.3 |
1997 |
Germany |
dp |
JQ411574 |
| CSF0410 |
“Congenital Tremor” |
outgroup |
1964 |
Great Britain |
dp |
JQ411575 |
| CSF0436 |
|
2.3 |
1995 |
Germany |
dp |
JQ411576 |
| CSF0485 |
|
2.3 |
1997 |
Germany |
wb |
JQ411577 |
| CSF0496 |
|
2.3 |
1982 |
Germany |
dp |
JQ411578 |
| CSF0573 |
“Parma” |
2.2 |
1998 |
Italy |
dp |
JQ411579 |
| CSF0600 |
|
2.3 |
1998 |
Germany |
wb |
JQ411580 |
| CSF0638 |
“Spante” |
2.3 |
1998 |
Germany |
wb |
JQ411581 |
| CSF0708 |
|
2.1 |
2000 |
Great Britain |
dp |
JQ411582 |
| CSF0710 |
|
2.3 |
2000 |
Slovakia |
wb |
JQ411583 |
| CSF0729 |
|
2.3 |
2000 |
Germany |
wb |
JQ411584 |
| CSF0750 |
“Castellon” |
2.3 |
2001 |
Spain |
dp |
JQ411585 |
| CSF0867 |
|
2.3 |
2006 |
Croatia |
dp |
JQ411586 |
| CSF0906 |
“Bergen” |
2.2 |
unknown |
The Netherlands |
dp |
JQ411587 |
| CSF0947 |
“Brescia” |
1.1 |
1951 |
Italy |
dp |
JQ411588 |
| CSF1027 |
|
2.3 |
2007 |
Hungary |
wb |
JQ411589 |
| CSF1032 |
|
2.3 |
2007 |
Slovakia |
wb |
JQ411590 |
| CSF1048 | “Panevezys” | 2.1 | 2009 | Lithuania | dp | JQ411591 |
1 All virus isolates were kindly provided by collaborating institutes, which are named as references in the CSF database and in the respective GenBank entries.
2 dp, domestic pig; wb, wild boar.
3 5´NTR-E2 sequences (3508–3510 nt).