Table 5.
Number of variable positions in individual genomic regions of the CSFV genome1.
|
isolate identification |
variable nucleotide positions/region2 |
||||||||
|---|---|---|---|---|---|---|---|---|---|
| name | subgenotype | NTR frag (150 nt) | Npro (504 nt) | C (297 nt) | Erns (681 nt) | E1 (585 nt) | E2 frag (190 nt) | E2 (1119 nt) | 5´NTR-E2 (3508–3510 nt) |
| “P97” |
3.4 |
0 |
16 |
9 |
12 |
12 |
1 |
18 |
75 |
| “94.4-IL-94-TWN” | |||||||||
| “SWH” |
1.1 |
0 |
31 |
29 |
16 |
37 |
35 |
72 |
196 |
| “JL1-06” | |||||||||
| “Shimen-HVRI” | |||||||||
| “India” | |||||||||
| CSF0947 “Brescia” |
1.1 |
0 |
5 |
2 |
6 |
2 |
4 |
12 |
27 |
| “Brescia” | |||||||||
| “CAP” |
1.1 |
0 |
27 |
13 |
51 |
29 |
21 |
83 |
214 |
| “Glentorf” |
1.1 |
||||||||
| “CS” |
1.2 |
||||||||
| “RUCSFPLUM” |
1.2 |
||||||||
| “LOM” |
1.1 |
0 |
6 |
1 |
4 |
3 |
3 |
16 |
32 |
| “Alfort187” | |||||||||
| CSF0021 |
2.1 |
0 |
29 |
10 |
36 |
19 |
9 |
40 |
138 |
| CSF0277 | |||||||||
| CSFO283 | |||||||||
| CSF0729 |
2.3 |
0 |
17 |
11 |
14 |
14 |
10 |
50 |
109 |
| CSF0002 “Atzbuell” | |||||||||
| “Alfort-Tuebingen” | |||||||||
| CSF1027 |
2.3 |
0 |
0 |
0 |
0 |
3 |
0 |
2 |
5 |
| CSF1032 | |||||||||
| CSF0120 |
2.3 |
0 |
11 |
8 |
5 |
5 |
6 |
21 |
52 |
| CSF0291 | |||||||||
| CSF0485 |
2.3 |
0 |
3 |
1 |
1 |
1 |
1 |
4 |
10 |
| CSF0638 “Spante” | |||||||||
| CSF0083 “Rostock I” |
2.3 | 0 | 3 | 1 | 4 | 1 | 1 | 5 | 14 |
| CSF0600 | |||||||||
1 with respect to individual groups of CSFV isolates not distinguishable in the 5´NTR fragment.
2 results of ClustalW sequence analysis of 55 CSFV isolates (MUSCLE, v3.8).