Table 1.
Summary of the SNP and haplotypes associated with carcass weight
| Category1) | SNP or Haplotype | Chr | Position (Btau4.0) | Allele substitution effect (kg) | p-value | Q allele | q allele | Q frequency |
|---|---|---|---|---|---|---|---|---|
| A |
Hapmap26308-BTC-057761 |
6 |
37,963,147 |
35.5 |
9.65E-12 |
A |
G |
0.199 |
| |
BTA-52694-no-rs |
8 |
89,397,242 |
26.0 |
4.24E-09 |
A |
G |
0.138 |
| |
Hapmap46986-BTA-34282 |
14 |
23,519,449 |
27.2 |
1.03E-12 |
A |
G |
0.759 |
| B |
NCAPG c.1326T > G |
6 |
38,164,357 |
35.3 |
5.28E-12 |
G |
T |
0.200 |
| |
Hapmap40466-BTA-82123 and BTA-52694-no-rs |
8 |
- |
35.0 |
8.13E-13 |
C-A |
Others |
0.115 |
| FJX_PLAPROTRI | 14 | 23,264,810 | 28.4 | 2.84E-14 | (CCG)11 | (CCG)9 | 0.754 |
1)A, SNP on the BovineSNP50 BeadChip that showed the strongest association on a chromosome.
1)B, Critical SNP or a haplotype in the associated regions.