Table 6. Results on real datasets for transcription factor-binding sites discovery.

Data	Predicted Motifs	Matched Binding Sites
mus05r	AGAGGAAAAAAAAAAGGAG	s 1: GGAAAAACAAAGGTAATG
mus07r	CTGCCCACCCTCTGCAACCC	s 4: CCCAACACCTGCTGCCTGAGCC
mus11r	AGGGCGGGGGGCGGAGCG	s 2: GCCGCCGGGGTGGGGCTGAG
		s 3: GGGGGGGGGGGCGGGGC
		s 4: GTGGGGGCGGGGCCTT
		s 9: GAACAGGAAGTGAGGCGG
hm03r	AAAAGAAAAAAAAATAAACAA	s 1: TCAAGCAAAAAAAATAAATAAATACCTATGCAA
		s 2: ACAAGCAAACAAAATAAATATCTGTGCAATAT
		s 3: TATGAGCAAACAAAATAAATACCTGTGCAA
hm08r	CGTGCAGTCCCCTTCAT	s 10: TATGGTCATGACGTCTGACAGAGC
hm19r	CCCTTCCACCACCCACAG	s 2: CACTTTTAGCTCCTCCCCCCA
hm26r	CCCCCCGCCTCCCGCTCCC	s 3: CCCCGCCTCAGGCTCCCGGGG
		s 7: CTCAGCCTGCCCCTCCCAGGGATTAAG
		s 8: GCGCCGAGGCGTCCCCGAGGCGC

The datasets are from mouse (resp. human) if their names start with “mus” (resp. “hm”).