Table 3. Prevalence of pcpA. psrP and pilus-1 according to clonotypes (ST) detected in the study.
pcpA | psrP | pilus-1 | ||||||
ST | Isolates | Serotype | Positive | % Positive | Positive | % Positive | Positive | % Positive |
306 | 109 | 1 (n = 109) | 107 | 98.2 | 106 | 97.2 | 0 | 0.0 |
191 | 32 | 7F (n = 32) | 32 | 100.0 | 3 | 9.4 | 0 | 0.0 |
1223 | 25 | 5 (n = 25) | 23 | 92.0 | 21 | 84.0 | 0 | 0.0 |
304 | 22 | 1 (n = 22) | 22 | 100.0 | 1 | 4.5 | 0 | 0.0 |
1201 | 19 | 19A (n = 19) | 18 | 94.7 | 19 | 100.0 | 0 | 0.0 |
276 | 18 | 19A (n = 18) | 18 | 100.0 | 3 | 16.7 | 0 | 0.0 |
320 | 16 | 19A (n = 16) | 16 | 100.0 | 0 | 0.0 | 16 | 100.0 |
180 | 15 | 3 (n = 15) | 1 | 6.7 | 1 | 6.7 | 0 | 0.0 |
156 | 13 | 14 (n = 13) | 13 | 100.0 | 0 | 0.0 | 13 | 100.0 |
2013 | 13 | 19A (n = 13) | 13 | 100.0 | 2 | 15.4 | 0 | 0.0 |
2372 | 12 | 23B (n = 10) | 10 | 83.4 | 1 | 8.3 | 0 | 0.0 |
19A (n = 1) | 1 | 8.3 | 1 | 8.3 | 1 | 8.3 | ||
23F (n = 1) | 1 | 8.3 | 0 | 0 | 0 | 0 | ||
97 | 11 | 10A (n = 11) | 11 | 100.0 | 2 | 18.2 | 1 | 9.1 |
289 | 8 | 5 (n = 8) | 4 | 50.0 | 8 | 100.0 | 0 | 0.0 |
63 | 7 | 15A (n = 4) | 4 | 57.1 | 1 | 14.3 | 0 | 0.0 |
15B (n = 1) | 1 | 14.3 | 1 | 14.3 | 0 | 0.0 | ||
15C (n = 1) | 1 | 14.3 | 0 | 0.0 | 0 | 0.0 | ||
38 (n = 1) | 1 | 14.3 | 1 | 14.3 | 0 | 0.0 | ||
4677 | 6 | 24F (n = 6) | 6 | 100.0 | 0 | 0.0 | 0 | 0.0 |
2100 | 6 | 19F (n = 6) | 6 | 100.0 | 1 | 16.7 | 0 | 0.0 |
1167 | 6 | 19F (n = 5) | 1 | 16.7 | 5 | 83.3 | 4 | 66.6 |
19A (n = 1) | 0 | 0.0 | 1 | 16.7 | 1 | 16.7 | ||
838 | 6 | 9V (n = 6) | 6 | 100.0 | 0 | 0.0 | 6 | 100.0 |
230 | 6 | 24F (n = 3) | 3 | 50.0 | 0 | 0.0 | 0 | 0.0 |
24 (n = 2) | 2 | 33.3 | 0 | 0.0 | 0 | 0.0 | ||
24B (n = 1) | 1 | 16.7 | 0 | 0.0 | 0 | 0.0 | ||
202 | 6 | 19A (n = 6) | 5 | 83.3 | 2 | 33.3 | 5 | 83.3 |
113 | 6 | 18C (n = 6) | 6 | 100.0 | 5 | 83.3 | 0 | 0.0 |
199 | 5 | 19A (n = 4) | 4 | 80.0 | 4 | 80.0 | 0 | 0.0 |
15B (n = 1) | 1 | 20.0 | 1 | 20.0 | 0 | 0.0 | ||
42 | 5 | 23A (n = 5) | 5 | 100.0 | 4 | 80.0 | 0 | 0.0 |
1262 | 4 | 15B (n = 2) | 2 | 50.0 | 2 | 50.0 | 0 | 0.0 |
15C (n = 2) | 2 | 50.0 | 2 | 50.0 | 0 | 0.0 | ||
433 | 4 | 22 (n = 1) | 1 | 25.0 | 0 | 0.0 | 0 | 0.0 |
22F (n = 1) | 1 | 25.0 | 1 | 25.0 | 0 | 0.0 | ||
19A (n = 1) | 1 | 25.0 | 0 | 0.0 | 0 | 0.0 | ||
28 (n = 1) | 1 | 25.0 | 0 | 0.0 | 0 | 0.0 | ||
416 | 4 | 19A (n = 4) | 4 | 100.0 | 4 | 100.0 | 1 | 25.0 |
386 | 4 | 6B (n = 4) | 4 | 100.0 | 1 | 25.0 | 2 | 50.0 |
90 | 4 | 6A (n = 2) | 1 | 25.0 | 0 | 0.0 | 2 | 50.0 |
6B (n = 2) | 2 | 50.0 | 0 | 0.0 | 2 | 50.0 | ||
81 | 4 | 19A (n = 2) | 2 | 50.0 | 2 | 50.0 | 0 | 0.0 |
19F (n = 1) | 1 | 25.0 | 1 | 25.0 | 0 | 0.0 | ||
23F (n = 1) | 1 | 25.0 | 1 | 25.0 | 0 | 0.0 | ||
30 | 4 | 16 (n = 2) | 2 | 50.0 | 2 | 50.0 | 0 | 0.0 |
16F (n = 2) | 2 | 50.0 | 2 | 50.0 | 0 | 0.0 | ||
2690 | 3 | 29 (n = 2) | 2 | 66.7 | 1 | 33.3 | 0 | 0.0 |
21 (n = 1) | 1 | 33.3 | 0 | 0.0 | 0 | 0.0 | ||
1684 | 3 | 31 (n = 2) | 2 | 66.7 | 0 | 0.0 | 0 | 0.0 |
1 (n = 1) | 1 | 33.3 | 0 | 0.0 | 0 | 0.0 | ||
1143 | 3 | 6A (n = 3) | 3 | 100.0 | 3 | 100.0 | 1 | 33.3 |
310 | 3 | 38 (n = 2) | 0 | 0.0 | 0 | 0.0 | 2 | 66.7 |
34 (n = 1) | 0 | 0.0 | 0 | 0.0 | 1 | 33.3 | ||
280 | 3 | 9V (n = 2) | 2 | 66.7 | 2 | 66.7 | 0 | 0.0 |
9N (n = 1) | 1 | 33.3 | 1 | 33.3 | 0 | 0.0 | ||
224 | 3 | 6A (n = 3) | 3 | 100.0 | 0 | 0.0 | 0 | 0.0 |
193 | 3 | 21 (n = 2) | 2 | 66.7 | 2 | 66.7 | 0 | 0.0 |
15B (n = 1) | 1 | 33.3 | 1 | 33.3 | 0 | 0.0 | ||
101 | 3 | 15C (n = 2) | 2 | 66.7 | 2 | 66.7 | 0 | 0.0 |
15B (n = 1) | 1 | 33.3 | 0 | 0.0 | 0 | 0.0 | ||
72 | 3 | 24 (n = 2) | 2 | 66.7 | 2 | 66.7 | 0 | 0.0 |
24F (n = 1) | 1 | 33.3 | 1 | 33.3 | 0 | 0.0 |
Other ST detected with 2 isolates each: ST62, ST109, ST162, ST177, ST338, ST393, ST439, ST447, ST558, ST989, ST1011, ST1220, ST1377, ST1624, ST1692, ST2611, ST2948, ST4310, ST4828, ST5223, and ST5740.
1 isolate each: ST9, ST66, ST88, ST94, ST110, ST124, ST143, ST176, ST179, ST205, ST217, ST228, ST245, ST260, ST274, ST311, ST315, ST327, ST343, ST392, ST404, ST425, ST446, ST450, ST460, ST494, ST557, ST614, ST876, ST994, ST1012, ST1064, ST1264, ST1475, ST1504, ST1577, ST1589, ST1611, ST1664, ST1844, ST1848, ST2319, ST2333, ST2376, ST2377, ST2467, ST2557, ST2590, ST2592, ST2594, ST2595, ST2618, ST2946, ST2947, ST2949, ST3254, ST3259, ST3436, ST3437, ST3438, ST3490, ST3609, ST3787, ST4306, ST4676, ST4796, ST4826, ST4832, ST4834, ST5224, ST5741, ST5825, ST5829, ST6006, ST6040, ST6394, ST6518 and ST6519.