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. Author manuscript; available in PMC: 2013 Jul 25.
Published in final edited form as: J Am Chem Soc. 2012 Jul 5;134(29):12219–12229. doi: 10.1021/ja3041866

Table 2.

Sequence alignment of the proposed active site residues of currently known DHQS-like sugar phosphate cyclases

Protein 130 146 152 162 194 197 250 260 264 268 271 275 287 356
DHQS R D K N E K K E R N H H H K
aDHQS R D K N E R K D R N H H H K
DOIS R D K N E K K E G E H H H K
EEVS R D K N E K M E R D H P H P
EVS R D K N E K K E R N H H H R
DDGS R D K N E K M E R A H P H P

Multiple amino acid sequence alignment was conducted by ClustalW. Full-length amino acid sequences were aligned using the following parameters: protein weight matrix=Blosum, gap open penalty=15, gap extension penalty=0.2. Numbering is based on DHQS domain of AROM from A. nidulans. Proteins used for multiple sequence alignment are listed in Supplemental Table S1.