Table 3.
Simple sequence repeats (SSRs) currently available for flax including reference, source, number of genotypes tested and SSR statistics
| Reference | SSR sourcea | Genotypes tested | Polymorphic primer pairs | Loci detected | Loci per primer pair | Alleles per locusb | PICb,c |
|---|---|---|---|---|---|---|---|
| Wiesner et al. (2001) | Genomic | 8 | 10 | – | – | 3.7 (2–8) | 0.60 (0.25–1.00) |
| Roose-Amsaleg et al. (2006) | Genomic | 93 | 23 | 28 | 1.22 | 3.3 (2–10) | 0.33 (0.02–0.73) |
| Cloutier et al. (2009) | ESTs | 23 | 248 | 275 | 1.11 | 2.3 (2–7) | 0.35 (0.08–0.82) |
| Soto-Cerda et al. (2011a) | Genomic | 60 | 60 | 66 | 1.10 | 3.0 (2–8) | 0.39 (0.06–0.87) |
| Deng et al. (2010) | Genomic | 8 | 35 | 37 | 1.06 | 3.5 (2–6) | 0.60 (0.23–0.84) |
| Soto-Cerda et al. (2011b) | ESTs | 61 | 23 | 23 | 1.00 | 2.3 (2–4) | 0.38 (0.08–0.55) |
| Deng et al. (2011) | Genomic | 8 | 38 | 38 | 1.00 | 3.4 (2–12) | 0.43 (0.20–0.88) |
| Kale et al. (2011) | Genomic | 27 | 9 | – | – | – | – |
| Bickel et al. (2011) | Genomic | 19 | 42 | 42 | 1.00 | 3.3 (2–8) | 0.47 (0.10–0.86) |
| Rachinskaya et al. (2011) | Genomic | 15 | 20 | 22 | 1.10 | 3.0 (2–7) | 0.42 (0.03–0.77) |
| Cloutier et al. (this publication) | ESTs | 16 | 145 | 149 | 1.03 | 2.4 (2–6) | 0.34 (0.12–0.70) |
| Cloutier et al. (this publication) | BESs | 16 | 673 | 720 | 1.07 | 2.8 (2–9) | 0.39 (0.12–0.85) |
| Total | 1,326 | 1,400 | 1.07 |
aGenomic library or published genomic sequences; expressed sequence tags (ESTs); BAC-end sequences (BESs)
bAverage value followed by range in brackets
cPolymorphism information content