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. Author manuscript; available in PMC: 2013 Feb 1.
Published in final edited form as: Pharmacogenomics J. 2011 May 24;12(4):349–358. doi: 10.1038/tpj.2011.19

Table 2. nAChR gene common variant association with nausea severity at 21 days.

SNP ID A11 A22 Gene Type MAF PAdd3 PDom4
rs2280781 C T CHRNB2 5′ UTR 0.101 0.359 0.278
rs4845378 G T CHRNB2 intron 0.097 0.259 0.259
rs2072660 T C CHRNB2 3′ UTR 0.244 0.004 0.006
rs2072661 G A CHRNB2 3′ UTR 0.245 0.006 0.005
rs4292956 C T CHRNB2 3′ UTR 0.066 0.056 0.021
rs2472553 G A CHRNA2 non-syn 0.139 0.465 0.791
rs13277254 G A CHRNB3 up 0.234 0.889 0.837
rs13280301 A G CHRNB3 up 0.178 0.948 0.786
rs13277524 G T CHRNB3 up 0.234 0.889 0.837
rs6474413 C T CHRNB3 up 0.232 0.986 0.896
rs4950 G A CHRNB3 5′ UTR 0.236 0.901 0.855
rs2304297 G C CHRNA6 3′ UTR 0.244 0.288 0.281
rs71653603 C T CHRNA7 syn 0.060 0.878 0.878
rs569207 C T CHRNA5 intron 0.196 0.466 0.542
rs16969968 G A CHRNA5 non-syn 0.367 0.790 0.698
rs615470 T C CHRNA5 3′ UTR 0.381 0.912 0.462
rs8192482 C T CHRNA5 3′ UTR 0.368 0.911 0.541
rs564585 A G CHRNA5 3′ UTR 0.237 0.786 0.607
rs12899226 T G CHRNA3 down 0.052 0.051 0.051
rs660652 A G CHRNA3 3′ UTR 0.383 0.929 0.462
rs472054 A G CHRNA3 3′ UTR 0.379 0.925 0.475
rs578776 A G CHRNA3 3′ UTR 0.247 0.836 0.749
rs1051730 G A CHRNA3 syn 0.367 0.802 0.675
rs3743075 T C CHRNA3 syn 0.378 0.981 0.533
rs3743074 G A CHRNA3 intron 0.378 0.969 0.587
rs8040868 T C CHRNA3 syn 0.429 0.376 0.491
rs8192475 C T CHRNA3 non-syn 0.050 0.362 0.362
rs12914008 G A CHRNB4 non-syn 0.051 0.208 0.208
rs3813567 G A CHRNB4 up 0.157 0.781 0.824
rs2302765 T C CHRNB1 intron 0.159 0.182 0.142
rs12452047 A G CHRNB1 intron 0.166 0.235 0.172
rs7210231 C A CHRNB1 intron 0.199 0.268 0.242
rs2302761 C T CHRNB1 intron 0.202 0.192 0.183
rs2302763 T C CHRNB1 intron 0.164 0.462 0.394
rs2302764 T C CHRNB1 3′ UTR 0.160 0.062 0.047
rs3827020 T C CHRNA4 intron 0.153 0.160 0.271
rs45442394 G A CHRNA4 intron 0.066 0.333 0.235
rs1044397 C T CHRNA4 syn 0.460 0.331 0.369
rs1044396 G A CHRNA4 syn 0.458 0.180 0.177
rs2229960 A G CHRNA4 syn 0.059 0.627 0.681
rs2229959 C A CHRNA4 syn 0.122 0.702 0.858
rs1044394 A G CHRNA4 syn 0.071 0.985 0.919
rs6090384 T C CHRNA4 intron 0.063 0.752 0.814
rs2273505 C T CHRNA4 intron 0.066 0.269 0.337
rs2273506 G A CHRNA4 syn 0.065 0.358 0.444
1

A1=allele 1;

2

A2=allele 2;

3

PAdd= P of additive model;

4

PDom= P of dominant model.