Table 2. nAChR gene common variant association with nausea severity at 21 days.
SNP ID | A11 | A22 | Gene | Type | MAF | PAdd3 | PDom4 |
---|---|---|---|---|---|---|---|
rs2280781 | C | T | CHRNB2 | 5′ UTR | 0.101 | 0.359 | 0.278 |
rs4845378 | G | T | CHRNB2 | intron | 0.097 | 0.259 | 0.259 |
rs2072660 | T | C | CHRNB2 | 3′ UTR | 0.244 | 0.004 | 0.006 |
rs2072661 | G | A | CHRNB2 | 3′ UTR | 0.245 | 0.006 | 0.005 |
rs4292956 | C | T | CHRNB2 | 3′ UTR | 0.066 | 0.056 | 0.021 |
rs2472553 | G | A | CHRNA2 | non-syn | 0.139 | 0.465 | 0.791 |
rs13277254 | G | A | CHRNB3 | up | 0.234 | 0.889 | 0.837 |
rs13280301 | A | G | CHRNB3 | up | 0.178 | 0.948 | 0.786 |
rs13277524 | G | T | CHRNB3 | up | 0.234 | 0.889 | 0.837 |
rs6474413 | C | T | CHRNB3 | up | 0.232 | 0.986 | 0.896 |
rs4950 | G | A | CHRNB3 | 5′ UTR | 0.236 | 0.901 | 0.855 |
rs2304297 | G | C | CHRNA6 | 3′ UTR | 0.244 | 0.288 | 0.281 |
rs71653603 | C | T | CHRNA7 | syn | 0.060 | 0.878 | 0.878 |
rs569207 | C | T | CHRNA5 | intron | 0.196 | 0.466 | 0.542 |
rs16969968 | G | A | CHRNA5 | non-syn | 0.367 | 0.790 | 0.698 |
rs615470 | T | C | CHRNA5 | 3′ UTR | 0.381 | 0.912 | 0.462 |
rs8192482 | C | T | CHRNA5 | 3′ UTR | 0.368 | 0.911 | 0.541 |
rs564585 | A | G | CHRNA5 | 3′ UTR | 0.237 | 0.786 | 0.607 |
rs12899226 | T | G | CHRNA3 | down | 0.052 | 0.051 | 0.051 |
rs660652 | A | G | CHRNA3 | 3′ UTR | 0.383 | 0.929 | 0.462 |
rs472054 | A | G | CHRNA3 | 3′ UTR | 0.379 | 0.925 | 0.475 |
rs578776 | A | G | CHRNA3 | 3′ UTR | 0.247 | 0.836 | 0.749 |
rs1051730 | G | A | CHRNA3 | syn | 0.367 | 0.802 | 0.675 |
rs3743075 | T | C | CHRNA3 | syn | 0.378 | 0.981 | 0.533 |
rs3743074 | G | A | CHRNA3 | intron | 0.378 | 0.969 | 0.587 |
rs8040868 | T | C | CHRNA3 | syn | 0.429 | 0.376 | 0.491 |
rs8192475 | C | T | CHRNA3 | non-syn | 0.050 | 0.362 | 0.362 |
rs12914008 | G | A | CHRNB4 | non-syn | 0.051 | 0.208 | 0.208 |
rs3813567 | G | A | CHRNB4 | up | 0.157 | 0.781 | 0.824 |
rs2302765 | T | C | CHRNB1 | intron | 0.159 | 0.182 | 0.142 |
rs12452047 | A | G | CHRNB1 | intron | 0.166 | 0.235 | 0.172 |
rs7210231 | C | A | CHRNB1 | intron | 0.199 | 0.268 | 0.242 |
rs2302761 | C | T | CHRNB1 | intron | 0.202 | 0.192 | 0.183 |
rs2302763 | T | C | CHRNB1 | intron | 0.164 | 0.462 | 0.394 |
rs2302764 | T | C | CHRNB1 | 3′ UTR | 0.160 | 0.062 | 0.047 |
rs3827020 | T | C | CHRNA4 | intron | 0.153 | 0.160 | 0.271 |
rs45442394 | G | A | CHRNA4 | intron | 0.066 | 0.333 | 0.235 |
rs1044397 | C | T | CHRNA4 | syn | 0.460 | 0.331 | 0.369 |
rs1044396 | G | A | CHRNA4 | syn | 0.458 | 0.180 | 0.177 |
rs2229960 | A | G | CHRNA4 | syn | 0.059 | 0.627 | 0.681 |
rs2229959 | C | A | CHRNA4 | syn | 0.122 | 0.702 | 0.858 |
rs1044394 | A | G | CHRNA4 | syn | 0.071 | 0.985 | 0.919 |
rs6090384 | T | C | CHRNA4 | intron | 0.063 | 0.752 | 0.814 |
rs2273505 | C | T | CHRNA4 | intron | 0.066 | 0.269 | 0.337 |
rs2273506 | G | A | CHRNA4 | syn | 0.065 | 0.358 | 0.444 |
A1=allele 1;
A2=allele 2;
PAdd= P of additive model;
PDom= P of dominant model.