Table 1.
Culture, PCR, and HRMA results for spontaneous bacterial peritonitis with Gram-typing probe analysis for polymicrobial samples
Sample | Culture result | 16S PCR result | HRMA identification | Discordant analysisf |
---|---|---|---|---|
1 | Staphylococcus aureus | Positive | Staphylococcus aureus | NA |
2 | MRSA | Positive | Staphylococcus aureus | NA |
3 | Staphylococcus sp.e | Positive | Staphylococcus hominis | NA |
4 | Enterococcus faecalis | Positive | Enterococcus faecalis | NA |
5 | Pseudomonas aeruginosa | Positive | Pseudomonas aeruginosa | NA |
6 | Coagulase-negative Staphylococcus sp.e | Positive | Staphylococcus saprophyticus | NA |
7 | Coagulase-negative Staphylococcus sp.e | Positive | Staphylococcus lugdunensis | NA |
8 | Enterococcus faecium | Positive | Enterococcus faecium | NA |
9 | Beta-hemolytic Streptococcus sp.e | Positive | Streptococcus agalactiae | NA |
10 | Coagulase-negative Staphylococcus sp.e | Positive | Staphylococcus saprophyticus | NA |
11 | Serratia marcescens | Positive | Serratia marcescens | NA |
12 | Enterococcus faecalis | Positive | Enterococcus faecalis | NA |
13 | Klebsiella sp. and Enterococcus sp. | Positive | Polymicrobiala | Positive by GPc and GNd |
14 | Enterococcus sp. | Positive | Unidentifiedb | Positive by GP |
15 | Enterobacter aerogenes and Escherichia coli and alpha-hemolytic Streptococcus sp. | Positive | Polymicrobiala | Positive by GP and GN |
16 | Streptococcus anginosus and Staphylococcus intermedius and Streptococcus constellatus | Positive | Polymicrobiala | Positive by GP |
17 | Escherichia coli and Streptococcus viridans | Positive | Polymicrobiala | Positive by GP and GN |
18 | Negative | Positive | Polymicrobiala | Positive by GP and GN |
19 | Negative | Positive | Polymicrobiala | Positive by GP and GN |
20 | Negative | Positive | Polymicrobiala | Positive by GN |
21 | Negative | Positive | Micrococcus luteus | NA |
Multiple melting curve profiles were generated, indicating a polymicrobial infection.
A single melting curve profile was generated, but it was inconsistent with all organisms in the HRMA library.
Gram-positive typing probe.
Gram-negative typing probe.
Further characterization was not possible due to lack of sample for sequencing analysis.
NA, not applicable.