Table 2. MHC-II binding results for the identified four peptide segments.

PeptideSegmentNumber	Allele	Position	Sequence	arb_core	arb_score	arb_percentile	smm_core	smm_score	smm_percentile	Consensuspercentile
A	HLA DPA1*01-DPB1*0401	1∶193–207	VKVCPLNTQALGIGC	VKVCPLNTQ	4620.916471	39.42	LNTQALGIG	14895	80.96	60.19
	HLA DPA1*01-DPB1*0401	1∶194–208	KVCPLNTQALGIGCQ	PLNTQALGI	7408.864636	57.03	LNTQALGIG	16291	83.41	70.22
B	HLA DPA1*01-DPB1*0401	1∶241–255	TTTCTIRNCKKLGPR	RNCKKLGPR	55554.40475	99.04	IRNCKKLGP	35395	96.59	97.815
	HLA DPA1*01-DPB1*0401	1∶242–256	TTCTIRNCKKLGPRE	NCKKLGPRE	19175.64294	87.39	IRNCKKLGP	35871	96.7	92.045
C	HLA DPA1*01-DPB1*0401	1∶272–286	TADPTTNPQIERMMR	TADPTTNPQ	5420.43634	45.2	TTNPQIERM	25803	92.94	69.07
	HLA DPA1*01-DPB1*0401	1∶273–287	ADPTTNPQIERMMRV	ADPTTNPQI	5654.176164	46.76	TTNPQIERM	18235	86.23	66.495
D	HLA DPA1*01-DPB1*0401	1∶300–314	VDYINQIVQVMSKRS	VDYINQIVQ	4015.810591	34.58	INQIVQVMS	6833	53.94	44.26
	HLA DPA1*01-DPB1*0401	1∶301–315	DYINQIVQVMSKRSR	DYINQIVQV	7495.055799	57.47	INQIVQVMS	8788	63.44	60.455

Results of the peptide-a, b, c and d submitted to the IEDB T-cell MHC-II binding prediction server are tabulated here. For each peptide the server generates two overlapping peptides; the peptides for the four groups are shown in different colors.