Table 1.
Enrichment of VDR regions in LCLs within chromatin states in LCLs
| Variable | SE | WE | AP | WP | PP | R | H | I | ST | WT | CNV |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Global significance | P < 2.0e−05 | P < 2.0e−05 | P < 2.0e−05 | P < 2.0e−05 | P= 0.65 | P= 1 | P= 1 | P = 0.047 | P= 0.85 | P= 1 | P= 0.3 |
| Proportion of VDR regions covered | 0.438 | 0.068 | 0.329 | 0.039 | 0.002 | 0.004 | 0.022 | 0.008 | 0.065 | 0.022 | 0.003 |
| Enrichment | 45.26 | 2.33 | 63.41 | 5.88 | 0.963 | 0.125 | 0.009 | 1.47 | 1.06 | 0.19 | 1.22 |
| Significant chromosome arms | 41/41 | 20/41 | 41/41 | 33/41 | 0/41 | 0/41 | 0/41 | 0/41 | 0/41 | 0/41 | 0/41 |
SE, strong enhancer; WE, weak enhancer; AP, active promoter; WP, weak promoter; PP, poised promoter; PR, polycomb repressed; H, heterochromatic; I, insulator; ST, strong transcribed; WT, weak transcribed.