Table 1. Genes Encoding SODs in C. reinhardtii.
Gene | Protein IDa | RPKMb |
---|---|---|
FSD1 | Cre10.g436050 | 481.0 |
MSD1 | Cre02.g096150 | 281.0 |
MSD2 | Cre13.g605150 | 82.8 |
MSD3 | Cre16.g676150 | 4.6 |
MSD4 | Cre12.g490300 | 0.2 |
MSD5 | Cre17.g703150 | 0.2 |
SOD transcript abundance determined by RNA-sequencing in C. reinhardtii strain 2137 (data from the National Center for Biotechnology Information Gene Expression Omnibus, accession number GSE25124; Castruita et al., 2011). Cells were grown photoheterotrophically in nutrient-replete TAP medium (18 μM Fe).
Corresponding to the Au10.2 models in the version 4.0 genome assembly.
Reads per kilobase of exon per million mapped sequence reads (Mortazavi et al., 2008); paired-end reads mapped to Augustus 10.2 gene models.