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. 2012 Jun 27;12:33. doi: 10.1186/1472-6750-12-33

Table 2.

Sample preparation procedure and 454 sequencing results

Sample ID Preparation steps # raw reads # reads in contigs # contigs # singletons % globin reads
A1
ribo-minus > 1st & 2nd strand cDNA synthesis > NORM > 2nd amp
30,145
9,138
1,066
19,205
5.46
A2
wholeRNA > 1st&2nd strand cDNA synthesis > 2nd amp > NORM > 3rd amp
38,601
19,318
2,286
14,079
1.95
B1
globin-minus > ribo-minus > 1st&2nd strand cDNA synthesis
21,219
13,075
275
5,987
24.10
B2 globin-minus > ribo-minus > 1st&2nd strand cDNAsynthesis > NORM > 2nd amp 17,047 4,391 309 11,168 0.35

# counted.

Abbreviations used for preparation steps are explained in the Supplementary Information Additional files.