Table 2.
Sample ID | Preparation steps | # raw reads | # reads in contigs | # contigs | # singletons | % globin reads |
---|---|---|---|---|---|---|
A1 |
ribo-minus > 1st & 2nd strand cDNA synthesis > NORM > 2nd amp |
30,145 |
9,138 |
1,066 |
19,205 |
5.46 |
A2 |
wholeRNA > 1st&2nd strand cDNA synthesis > 2nd amp > NORM > 3rd amp |
38,601 |
19,318 |
2,286 |
14,079 |
1.95 |
B1 |
globin-minus > ribo-minus > 1st&2nd strand cDNA synthesis |
21,219 |
13,075 |
275 |
5,987 |
24.10 |
B2 | globin-minus > ribo-minus > 1st&2nd strand cDNAsynthesis > NORM > 2nd amp | 17,047 | 4,391 | 309 | 11,168 | 0.35 |
# counted.
Abbreviations used for preparation steps are explained in the Supplementary Information Additional files.