Table 1.
Primer sequences used in this study
Real-time PCR analysis | |||
---|---|---|---|
Target gene |
Forward (5′ → 3′) |
Reverse (5′ → 3′) |
Probe (5′ → 3′) |
MCPyV ST |
GCAAAAAAACTGTCTGACGTGG |
CCACCAGTCAAAACTTTCCCA |
FAM-TATCAGTGCTTTATTCTTTGGTTTGGATTTCCTCCT- TAMRA |
HPyV9 VP1 |
TGCTGTTGATATTGTTGGAATTCA |
AACAACCCGTTTCCTTAGAGTTACA |
FAM-CTGGAGAGGCCTACCT-NFQ-MGB |
Human RNase P |
AGATTTGGACCTGCGAGCG |
GAGCGGCTGTCTCCACAAGT |
FAM-TTCTGACCTGAAGGCTCTGCGCG-TAMRA |
| |||
PCR analysis | |||
Target gene (positions) |
Forward (5′ → 3′) |
Reverse (5′ → 3′) |
|
MCPyV LT (1867–2221) |
AGCCCCCTTACAAATTACTGCAAG* |
AGCATTTCTGTCCTGGTCATTTC* |
|
MCPyV ST-LT (183–828) |
GCATATAGACAAGATGGATTTA† |
ATAACCTTTCTTTGATATTTTGC† |
|
MCPyV ST-LT (571–1157) | TTGTCTCGCCAGCATTGTAG† | GGATCCAGAGGATGAGGTGGGTTC† |
*Primers for mutational analysis.
†Primers for sequence analysis of the ST-LT genes.