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. 2012 Jun 1;5:25. doi: 10.1186/1756-8722-5-25

Table 1.

Primer sequences used in this study

Real-time PCR analysis
Target gene
Forward (5′ → 3′)
Reverse (5′ → 3′)
Probe (5′ → 3′)
MCPyV ST
GCAAAAAAACTGTCTGACGTGG
CCACCAGTCAAAACTTTCCCA
FAM-TATCAGTGCTTTATTCTTTGGTTTGGATTTCCTCCT- TAMRA
HPyV9 VP1
TGCTGTTGATATTGTTGGAATTCA
AACAACCCGTTTCCTTAGAGTTACA
FAM-CTGGAGAGGCCTACCT-NFQ-MGB
Human RNase P
AGATTTGGACCTGCGAGCG
GAGCGGCTGTCTCCACAAGT
FAM-TTCTGACCTGAAGGCTCTGCGCG-TAMRA
 
PCR analysis
Target gene (positions)
Forward (5′ → 3′)
Reverse (5′ → 3′)
 
MCPyV LT (1867–2221)
AGCCCCCTTACAAATTACTGCAAG*
AGCATTTCTGTCCTGGTCATTTC*
 
MCPyV ST-LT (183–828)
GCATATAGACAAGATGGATTTA
ATAACCTTTCTTTGATATTTTGC
 
MCPyV ST-LT (571–1157) TTGTCTCGCCAGCATTGTAG GGATCCAGAGGATGAGGTGGGTTC  

*Primers for mutational analysis.

Primers for sequence analysis of the ST-LT genes.