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. 2012 Jul 27;7(7):e42166. doi: 10.1371/journal.pone.0042166

Table 1. Oligonucleotides used in EMSA.

Oligo Sequence Position relative to TSS
LKB1 FOXO Wt 5′-GGGGAGGGAGGTAAACAAGATGGCGGC-3′ −27 to −1
LKB1 FOXO Mut 5′-GGGGAGGGAGGTAGCCAAGATGGCGGC-3′ −27 to −1
FOXO3 FOXO A 5′-AGCCACCGCAGTAAGCAGTCAGAGCCC-3′ −2439 to −2413
FOXO3 FOXO B 5′-TGGGCGAAGCACAAACAGGAGGCTTTG-3′ −2168 to −2142
FOXO3 FOXO C 5′-CATTCCATTTAAAAATAACACCCACGT-3′ −1865 to −1839
FOXO3 FOXO D 5′-ACGTGCGCTGGTAAACAAGCGCGCGCG-3′ −1842 to −1816
FOXO E1 5′-TTTACTCGATTGTTTATTATTTGCTGG-3′ −1446 to −1420
FOXO E2 5′-GATTGTTTATTATTTGCTGGGGGGCGG-3′ −1439 to −1413
FOXO F 5′-TGACATCATCTGTTTGTACGCGTCGAA-3′ −1270 to −1244
FOXO G 5′-TTAAAAAATATATTTATGAACTAGTGT-3′ −1059 to −1033
FOXO H 5′-CTTGTGCAGATGTTTTTCGTTTAACCT-3′ −949 to −923
FOXO3 FOXO E2 WT 5′-TAGAATTTTACTCGATTGTTTATTATTTGCTGGGGGGCGG-3′ −1452 to −1413
FOXO3 E2 Linker 5′-GATTGTTTAT TAGCGCGGCGCGTTATTTGCTGGGGGGCGG-3′ −1452 to −1413
FOXO3 E2 MUT 5′-TAGAATTTTACTCGATTGCGTATTACGTGCTGGGGGGCGG-3′ −1452 to −1413

FOXO3 core binding motive is indicated in bold. Parts of adjacent FOXO3 binding sites within the same oligonucleotide are underlined.