Table 1. Oligonucleotides used in EMSA.
Oligo | Sequence | Position relative to TSS |
LKB1 FOXO Wt | 5′-GGGGAGGGAGGTAAACAAGATGGCGGC-3′ | −27 to −1 |
LKB1 FOXO Mut | 5′-GGGGAGGGAGGTAGCCAAGATGGCGGC-3′ | −27 to −1 |
FOXO3 FOXO A | 5′-AGCCACCGCAGTAAGCAGTCAGAGCCC-3′ | −2439 to −2413 |
FOXO3 FOXO B | 5′-TGGGCGAAGCACAAACAGGAGGCTTTG-3′ | −2168 to −2142 |
FOXO3 FOXO C | 5′-CATTCCATTTAAAAATAACACCCACGT-3′ | −1865 to −1839 |
FOXO3 FOXO D | 5′-ACGTGCGCTGGTAAACAAGCGCGCGCG-3′ | −1842 to −1816 |
FOXO E1 | 5′-TTTACTCGATTGTTTATTATTTGCTGG-3′ | −1446 to −1420 |
FOXO E2 | 5′-GATTGTTTATTATTTGCTGGGGGGCGG-3′ | −1439 to −1413 |
FOXO F | 5′-TGACATCATCTGTTTGTACGCGTCGAA-3′ | −1270 to −1244 |
FOXO G | 5′-TTAAAAAATATATTTATGAACTAGTGT-3′ | −1059 to −1033 |
FOXO H | 5′-CTTGTGCAGATGTTTTTCGTTTAACCT-3′ | −949 to −923 |
FOXO3 FOXO E2 WT | 5′-TAGAATTTTACTCGATTGTTTATTATTTGCTGGGGGGCGG-3′ | −1452 to −1413 |
FOXO3 E2 Linker | 5′-GATTGTTTAT TAGCGCGGCGCGTTATTTGCTGGGGGGCGG-3′ | −1452 to −1413 |
FOXO3 E2 MUT | 5′-TAGAATTTTACTCGATTGCGTATTACGTGCTGGGGGGCGG-3′ | −1452 to −1413 |
FOXO3 core binding motive is indicated in bold. Parts of adjacent FOXO3 binding sites within the same oligonucleotide are underlined.