Table 2. Comparison of different scanning regions and theoretical coverage of genes.
Target Region | Target Orthologous Region | Target Orthologous Region &depth≥10 | |
Length(bp) | 37,627,322 | 35,163,761 | 17,067,287 |
Fraction of raw Target Region | 100.00% | 93.45% | 45.36% |
Coverage of CCDS genes | 86.21% | 80.63% | 44.93% |
Summary of theoretical analysis for target region, target orthologous region and target orthologous region & depth≥10. Target orthologous region was the region we used to assess for capture efficiency and the target orthologous region & depth≥10 was used for SNP detection. 18,594 CCDS genes were used to analyze the theoretical coverage.