Table 6. Indel summary.

	CE1	CE2	JP (mean ± s.d.)	CM (mean ± s.d.)	HM1	HM2
Total number of indels	13,890	17,417	17,482.8±475.4	6,693.7±334.3	773	697
Ins-coding	698	910	1,072.4±40.3	427.6±17.6	93	84
Del-coding	607	698	696.5±17.6	360.3±8.4	59	56
Splice site	885	1,078	833.1±17.4	303.7±49.5	45	33
Intron	10,813	13,615	13,771.6±398.6	5,079.8±267.4	518	465
5′ UTRs	256	341	344.5±8.2	190.3±6.3	22	29
3′ UTRs	579	709	701.4±8.3	280.9±14.8	30	25
Intergenic	52	66	63.3±2.3	51.1±2.3	6	5
Total insertion	7,460	9,589	11,127.4±321.8	3,673.7±177.5	437	395
Total deletion	6,430	7,828	6355.4±155.8	3,020±177.6	336	302
Heterozygous indels	378	536	295.0±19.3	452.4±60.2	280	240
Homozygous indels	13,512	16,881	17,187.8±457.9	6,241.2±277.5	493	457

Each exome from 21 individuals was aligned to the human reference genome for indel identification.