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. 2012 Jul 31;6(7):e1747. doi: 10.1371/journal.pntd.0001747

Table 1. Clinical samples and laboratory results of primary and secondary BUD lesions.

Date of Sample Collection Clinical Presentation and Diameter of Lesion Sample Type Transport Medium Laboratory Results
MICa IS2404 PCRb IS2404 qPCRc 16S RT qPCRd CULe
July 20, 2010 Primary nodule, 30 mm FNAfPunch biopsy CLSgCLS negND negpos NDhND NDND NDND
July 13, 2011 Secondary nodule, 30 mm FNA(1)FNA(2) CLSPANTAj pos (1AFBi)neg negpos posneg NDND NDND
July 21, 2011 Ulcerated secondary nodule, 25×30 mm Punch biopsySwab (1)Swab (2)Swab (3) PANTAPANTAPANTAPANTA negnegNDND NDNDnegneg NDNDpospos NDNDnegneg No growthkNo growthNDND

Table 1 shows samples collected from the primary and secondary lesions in July 2010 and 2011 and the corresponding laboratory results. “Neg” indicates a negative test result, “pos” indicates a positive test result.

a

MIC, microscopic examination of acid fast bacilli (AFB) following Ziehl-Neelsen staining conducted at CHR, DITM, and INH (samples from secondary lesion only).

b

IS2404 PCR, conventional, single-step, gel-based IS2404 polymerase-chain-reaction conducted at DITM.

c

IS2404 qPCR, real-time quantitative IS2404 polymerase-chain-reaction conducted at DITM.

d

16S RT qPCR, Mycobacterium ulcerans–specific reverse-transcription real-time quantitative polymerase-chain-reaction targeting the ribosomal 16S RNA of M. ulcerans conducted at DITM.

e

CUL, mycobacterial culture on Löwenstein-Jensen medium conducted at IML red, synlab, Asklepios Gauting, Germany.

f

FNA, fine-needle aspiration.

g

CLS, Puregene cell lysis solution, Qiagen, Germany.

h

ND, not done.

i

AFB, acid fast bacilli.

j

PANTA, transport medium for viable mycobacteria containing Polymyxin B, Amphotericin, Nalidixic acid, Trimethoprim, and Azlocillin.

k

No growth, culture result negative, no growth of acid fast bacilli.