Table 4.
Potential miRNAs and their targets found only in seed coats at different developmental stages
| miRNA | Tissue | Target | Target Annotation | C.Site | Location | Category | TP100M | P-Value |
|---|---|---|---|---|---|---|---|---|
| gma-miR319 |
SC100 |
Glyma12g33640.1 |
TCP family transcription factor |
740 |
CDS |
0 |
106.396 |
0.0231 |
| |
SC100 |
Glyma15g09910.1 |
TCP family transcription factor |
959 |
CDS |
0 |
69.5668 |
0.0121 |
| gma-miR393 |
SC100 |
Glyma19g27280.1 |
LRR containing protein |
2207 |
CDS |
2 |
20.4608 |
0.032 |
| |
SC100 |
Glyma03g36770.1 |
LRR containing protein |
1750 |
CDS |
3 |
167.779 |
0.031 |
| |
SC100 |
Glyma16g05500.1 |
LRR containing protein |
2279 |
CDS |
3 |
20.4608 |
0.0132 |
| |
SC100 |
Glyma19g39420.1 |
LRR containing protein |
1751 |
CDS |
3 |
167.779 |
0.031 |
| gma-miR1508 |
SC100 |
Glyma13g35890.1 |
EF-hand containing protein |
517 |
3' UTR |
1 |
8.18433 |
0.0385 |
| gma-miR1518 |
SC100 |
Glyma15g12180.1 |
Ubiquitin-protein ligase |
273 |
CDS |
1 |
16.3687 |
0.02 |
| gma-miR1523 |
SC25 |
Glyma20g02470.1 |
LRR containg protein |
407 |
CDS |
1 |
5.26902 |
0.0419 |
| gma-miR1526 |
SC100 |
Glyma08g09640.1 |
No Functional Annotation |
424 |
CDS |
0 |
163.687 |
0.048 |
| |
SC100 |
Glyma08g09640.2 |
No Functional Annotation |
424 |
CDS |
0 |
163.687 |
0.048 |
| gma-miR2119 |
SC100 |
Glyma14g24860.1 |
Alcohol dehydrogenase |
99 |
CDS |
2 |
2488.04 |
0.0462 |
| gma-miR4374 |
SC100 |
Glyma01g36660.1 |
Ankyrin repeat containing protein |
2124 |
3' UTR |
1 |
8.18433 |
0.009 |
| gma-miR4377 |
SC25 |
Glyma06g04910.1 |
Cyclin family protein |
910 |
CDS |
4 |
2.63451 |
0.0297 |
| gma-miR4399 |
SC100 |
Glyma17g34370.1 |
No functional annotation |
637 |
3' UTR |
4 |
4.09216 |
0.0491 |
| gma-miR4406 |
SC25 |
Glyma03g17300.1 |
Glyoxal oxidase related protein |
1489 |
CDS |
0 |
73.7663 |
0.0082 |
| gma-miR4407 |
SC100 |
Glyma08g15670.1 |
Peptide transporter family protein |
1078 |
CDS |
1 |
1076.24 |
0.0159 |
| SC100 | Glyma05g04810.1 | Peptide transporter family protein | 918 | CDS | 1 | 1076.24 | 0.0159 |
CDS: Coding Sequence; UTR: Untranslated Region; TP100M: Transcripts per 100 million; C.site (Cleavage site): Nucleotide number from 5’ end of cDNA; P-value ≤0.05 using Cleaveland pipeline.
* and bold is miRNA whose target is shown in the target plot (t-plot) (Figure 1).