Table 5.
Comparison of miRNA target annotations between the Williams and Heinong44 data sets
| Annotations Unique to Williams | Annotations Unique to Heinong44 | Annotations Found in Both Data Sets |
|---|---|---|
| Alcohol/Zinc-binding dehydrogenase |
Polyubiquitin protein |
AGO protein |
| Alg9-like mannosyltransferase |
Plasmamembrane protein |
Auxin Response Factor |
| Aluminium induced protein |
Auxin signaling F-BOX protein |
Copper/zinc superoxide dismutase |
| Anion Exchange protein |
NADP+ |
Growth Regulating Factor |
| Ankyrin repeat containing protein |
MtN19-like protein |
HD-ZIP Transcription Factor |
| Ataxin-2 domain containing protein |
Serine-type endopeptidase |
MYB family Transcription Factor |
| bHLH family protein |
elongation factor |
No Apical Meristem protein (NAC Family) |
| BRE Expressed protein |
NSF attachment protein |
SBP domain containing protein |
| BTB/POZ domain containing protein |
Autophagy protein |
TCP family transcription factor |
| Calcineurin-like phosphoesterase |
embryo-related protein |
Nuclear Factor-YA |
| Cellulose synthase |
AP2 transcription factor |
Zinc Finger Family protein |
| Cyclin family protein |
heat shock cognate protein |
|
| Dynamin family protein |
expressed protein |
|
| EF-hand containing protein |
60 S ribosomal protein |
|
| Elongation Factor S-II |
Disulfide isomerase |
|
| F-box domain containing protein |
FAD linked oxidase family protein |
|
| Ferredoxin related protein |
Auxin inducible transcription factor |
|
| Glyoxal oxidase related protein |
ribulose-1,5-bisphosphate carboxylase |
|
| GTPase-activating protein |
|
|
| Integrase domain containing protein |
|
|
| lectin domain containing protein |
|
|
| LRR containing protein |
|
|
| mRNA capping enzyme |
|
|
| NADP/FAD oxidoreductase |
|
|
| NB-ARC domain containing protein |
|
|
| No Functional Annotation |
|
|
| PAZ domain containing protein |
|
|
| Peptide transporter family protein |
|
|
| Permease family protein |
|
|
| PPR repeat containing protein |
|
|
| Protein tyrosine kinase |
|
|
| Putative methyltransferase |
|
|
| Ras family protein |
|
|
| Ribose 5-phosphate isomerase |
|
|
| Serine protease inhibitor family |
|
|
| Serine-threonine protein kinase |
|
|
| START Domain containing protein |
|
|
| TIR domain containing protein |
|
|
| Transcription factor TFIID |
|
|
| Transferase family protein |
|
|
| Transmembrane protein 14 C |
|
|
| Transporter family protein |
|
|
| UBA domain containing protein |
|
|
| Ubiquitin-protein ligase |
|
|
| Uncharacterized conserved protein |
|
|
| Universal stress protein family |
Williams data sets from this study were generated using five degradome libraries of early, mid and late soybean seed developmental stage. The Heinong44 data set represented an earlier seed stage [21].