Table 3. Repetitive and transposable elements identified in isolates P131, Y34, and 70-15.
| 70-15 | Y34 | P131 | 70-15/P131a | 70-15/Y34 | P131/Y34 | |
| DNA transposon: | ||||||
| Pot2/Pot4 | 277 | 405 | 341 | 109 | 131 | 135 |
| Occan | 77 | 93 | 65 | 44 | 61 | 35 |
| Pot3 | 68 | 85 | 79 | 29 | 25 | 27 |
| LTR retrotransposon: | ||||||
| Maggy | 267 | 60 | 64 | 20 | 23 | 20 |
| MGLR3 | 81 | 74 | 50 | 30 | 35 | 27 |
| Pyret | 232 | 471 | 425 | 160 | 188 | 128 |
| RETRO5 | 329 | 103 | 86 | 21 | 21 | 37 |
| RETRO6 | 107 | 108 | 85 | 47 | 40 | 42 |
| RETRO7 | 119 | 103 | 102 | 51 | 42 | 47 |
| Grasshopper | 13 | 42 | 34 | 14 | 10 | 16 |
| LINE: | ||||||
| MGL | 187 | 141 | 127 | 58 | 53 | 52 |
| SINE: | ||||||
| Mg-SINE/Mg-MINE/Ch-SINE | 176 | 195 | 179 | 64 | 58 | 57 |
| New repetitive elements: | ||||||
| cluster1 (JQ929664)b | 25 | 54 | 52 | 33 | 32 | 31 |
| cluster2 (JQ929665) | 36 | 23 | 24 | 22 | 21 | 16 |
| cluster3 (JQ929666) | 78 | 86 | 78 | 58 | 60 | 45 |
| cluster4 (JQ929667) | 17 | 34 | 27 | 7 | 13 | 8 |
| cluster5 (JQ929668) | 47 | 58 | 63 | 47 | 43 | 47 |
| cluster6 (JQ929669) | 5 | 25 | 13 | 4 | 4 | 8 |
| cluster7 (JQ929670) | 22 | 43 | 30 | 14 | 17 | 15 |
| cluster8 (JQ929671) | 118 | 101 | 116 | 98 | 88 | 79 |
| cluster9 (JQ929672) | 16 | 18 | 15 | 14 | 15 | 12 |
a
The number of conserved repetitive and transposable elements in the 70-15 and P131 comparison.
b
GenBank accession number of new repetitive elements. The copy number of repetitive and transposable elements was calculated by RepeatMasker. LTR, long terminal repeat; LINE, long interspersed repeat element; SINE, short interspersed repeat element. Novel repetitive elements were identified by RepeatScout.