Table 6. Synonymous and non-synonymous changes in DNA and amino acid sequence in ACT1, BT2, Cdc42, Lac and HmgA genes of Fonsecaea spp.
Gene | Species | Total codon | 1st base | 2ed base | 3rd base | Amino acid change | Strains |
ACT1 | F. pedrosoi | 144 | |||||
F. monophora | 144 | ||||||
F. nubica | 144 | 1 | 9 | CAT→TAT/H→Y | All tested F. nubica | ||
BT2 | F. pedrosoi | 83 | 1 | 3 | TAT→GAT/Y→D | CBS 671.66, CBS 273.66, CBS 670.66 | |
F. monophora | 83 | 1 | |||||
F. nubica | 83 | 1 | |||||
Cdc42 | F. pedrosoi | 120 | |||||
F. monophora | 120 | 4 | |||||
F. nubica | 120 | 4 | |||||
Lac | F. pedrosoi | 236 | 1 | 5 | |||
F. monophora | 236 | 7 | |||||
F. nubica | 236 | 1 | 1 | 22 | CCG→CTG/P → L | All tested F. nubica | |
HmgA | F. pedrosoi | 204 | 1 | ||||
F. monophora | 204 | 3 | |||||
F. nubica | 204 | 4 | 1 | 21 | AGC→GGC/S→GGCC→ACC/A→TAGC→AAC/S→NGCT→ACT/A→T | All tested F. nubicaAll tested F. nubicaAll tested F. nubicaAll tested F. nubica | |
Total | 787 | 8 | 2 | 81 |
H: Histidine, Y: Tyrosine, D: Ariginine, P: Proline, L: Leucine, S: Serine, G: Glycine, A: Alanine, T: Threonine, N: Asparagine.
CBS: Centraalbureau voor Schimmelcultures, Utrecht, the Netherlands.